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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30873
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.2  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   3.2  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   3.2  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   5.5  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   5.5  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   5.5  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    26   5.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   7.3  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   7.3  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   7.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.3  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   9.7  

>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 523 DYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPL 621
           D+EK  S R   C+KG T YV      P+G+ L
Sbjct: 124 DFEKRCSVR---CLKGHTNYVSSIDFNPLGTLL 153


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 127  VTKRCAQVAIGCSRAAHQTALRGSTKPSPQ-LATLTPKVRAFVERSAA 267
            + K+ A   I C  +A+ T  +  T      L T  P+VRAF+E S A
Sbjct: 1845 MVKQAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIEFSLA 1892


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 321 PRLCLGAVAHVHVLRLAQSSAALHERANLWSESGQ 217
           P L L AV++V    L  +  +LH+ A   SESG+
Sbjct: 709 PALSLEAVSNVSRTALEDAERSLHKSATTTSESGK 743


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 365 CPNTITVGWPGQTRQTLPGLNPARSYALIG 454
           C ++  + WPG +RQ L  L+P   ++  G
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSPMLHFSFHG 323


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 347 RPPSNDCPNTITVGWPGQ-TRQTLPGLNPARSYALIGRATWSPRLAPARSPPWGTTSPPR 523
           +PPS      +      Q TR+ +  L+PA S A IG  T+     P+ +  +   + P 
Sbjct: 183 KPPSQPAIPIVPSEMAAQVTRENISSLDPAISAASIGNVTFGQPNIPSTTTDFAGLAAPN 242

Query: 524 I 526
           +
Sbjct: 243 M 243


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 516  GDVVPQGGLLAGASRGDHVALPIRAYERAGFNPGNVCRVCPGQPTVIVL 370
            G++  +  +L+     +   LPIR      ++   V  VCP +P  +VL
Sbjct: 1067 GEIYLRNHILSDEMANNLSILPIRIQAWVSYDSEKVTTVCPREPFKLVL 1115


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 24  NFIIKLSRV-SPFAALIN*QRKLHEA 98
           NF+ KLS + S  AAL+N QRKL +A
Sbjct: 509 NFLQKLSTLDSSLAALVNVQRKLIKA 534


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 497 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYWG 366
           A F P  A+    L + E  NV  S   T  G     +QLSYWG
Sbjct: 48  ATFTPDLAKRLAVLVKMEK-NVMRSMEVTIRGRRDCARQLSYWG 90


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 385 WLARTDPADVARVESRT 435
           WL  TDP+ V+RVE  T
Sbjct: 419 WLQNTDPSTVSRVEVST 435


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 366 QSFE-GGLLLHQL*QCPRLCLGAVAH-VHVLRLAQSSAALHERAN-LWS 229
           + FE G +++HQ+      CLG V+H    LRL   S A ++ ++ LW+
Sbjct: 682 EPFELGEVVIHQVIHTIEFCLGCVSHTASYLRLWALSLAHNQLSSVLWN 730


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 654 RRIRDFYADLRERRSHRTHREWYH 583
           + IR FY++L ++ SHR  +  YH
Sbjct: 278 KTIRMFYSNLYKKLSHRDAKSIYH 301


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 78  QRKLHEAFQDGVFYKERYEEMCSSGDWMQ 164
           Q  + + + + ++YK++YE+ C   + +Q
Sbjct: 402 QSSVSDLYSERLYYKQKYEQTCQEVERLQ 430


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 501 GELHLPPGLREGRVRQIPWLYERTHNVRDTIL 596
           G  +LP       V Q+PWL  R   +RD IL
Sbjct: 670 GSYNLPRSKGVSYVSQVPWL--RNATIRDNIL 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,243
Number of Sequences: 5004
Number of extensions: 57684
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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