Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30873
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 2.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.2
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 3.2
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 3.2
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 26 5.5
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 5.5
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 26 5.5
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 26 5.5
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 7.3
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 25 7.3
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 25 7.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.3
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 9.7
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 523 DYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPL 621
D+EK S R C+KG T YV P+G+ L
Sbjct: 124 DFEKRCSVR---CLKGHTNYVSSIDFNPLGTLL 153
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 127 VTKRCAQVAIGCSRAAHQTALRGSTKPSPQ-LATLTPKVRAFVERSAA 267
+ K+ A I C +A+ T + T L T P+VRAF+E S A
Sbjct: 1845 MVKQAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIEFSLA 1892
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 321 PRLCLGAVAHVHVLRLAQSSAALHERANLWSESGQ 217
P L L AV++V L + +LH+ A SESG+
Sbjct: 709 PALSLEAVSNVSRTALEDAERSLHKSATTTSESGK 743
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 365 CPNTITVGWPGQTRQTLPGLNPARSYALIG 454
C ++ + WPG +RQ L L+P ++ G
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSPMLHFSFHG 323
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 347 RPPSNDCPNTITVGWPGQ-TRQTLPGLNPARSYALIGRATWSPRLAPARSPPWGTTSPPR 523
+PPS + Q TR+ + L+PA S A IG T+ P+ + + + P
Sbjct: 183 KPPSQPAIPIVPSEMAAQVTRENISSLDPAISAASIGNVTFGQPNIPSTTTDFAGLAAPN 242
Query: 524 I 526
+
Sbjct: 243 M 243
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 516 GDVVPQGGLLAGASRGDHVALPIRAYERAGFNPGNVCRVCPGQPTVIVL 370
G++ + +L+ + LPIR ++ V VCP +P +VL
Sbjct: 1067 GEIYLRNHILSDEMANNLSILPIRIQAWVSYDSEKVTTVCPREPFKLVL 1115
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 24 NFIIKLSRV-SPFAALIN*QRKLHEA 98
NF+ KLS + S AAL+N QRKL +A
Sbjct: 509 NFLQKLSTLDSSLAALVNVQRKLIKA 534
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -2
Query: 497 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYWG 366
A F P A+ L + E NV S T G +QLSYWG
Sbjct: 48 ATFTPDLAKRLAVLVKMEK-NVMRSMEVTIRGRRDCARQLSYWG 90
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 385 WLARTDPADVARVESRT 435
WL TDP+ V+RVE T
Sbjct: 419 WLQNTDPSTVSRVEVST 435
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -1
Query: 366 QSFE-GGLLLHQL*QCPRLCLGAVAH-VHVLRLAQSSAALHERAN-LWS 229
+ FE G +++HQ+ CLG V+H LRL S A ++ ++ LW+
Sbjct: 682 EPFELGEVVIHQVIHTIEFCLGCVSHTASYLRLWALSLAHNQLSSVLWN 730
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 654 RRIRDFYADLRERRSHRTHREWYH 583
+ IR FY++L ++ SHR + YH
Sbjct: 278 KTIRMFYSNLYKKLSHRDAKSIYH 301
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/29 (24%), Positives = 18/29 (62%)
Frame = +3
Query: 78 QRKLHEAFQDGVFYKERYEEMCSSGDWMQ 164
Q + + + + ++YK++YE+ C + +Q
Sbjct: 402 QSSVSDLYSERLYYKQKYEQTCQEVERLQ 430
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 501 GELHLPPGLREGRVRQIPWLYERTHNVRDTIL 596
G +LP V Q+PWL R +RD IL
Sbjct: 670 GSYNLPRSKGVSYVSQVPWL--RNATIRDNIL 699
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,243
Number of Sequences: 5004
Number of extensions: 57684
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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