BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30873 (660 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 2.4 SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.2 SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 3.2 SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 3.2 SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 26 5.5 SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 5.5 SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 26 5.5 SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 26 5.5 SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 7.3 SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 25 7.3 SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 25 7.3 SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.3 SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 9.7 >SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 27.1 bits (57), Expect = 2.4 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +1 Query: 523 DYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPL 621 D+EK S R C+KG T YV P+G+ L Sbjct: 124 DFEKRCSVR---CLKGHTNYVSSIDFNPLGTLL 153 >SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 3699 Score = 26.6 bits (56), Expect = 3.2 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 127 VTKRCAQVAIGCSRAAHQTALRGSTKPSPQ-LATLTPKVRAFVERSAA 267 + K+ A I C +A+ T + T L T P+VRAF+E S A Sbjct: 1845 MVKQAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIEFSLA 1892 >SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase Gde1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1076 Score = 26.6 bits (56), Expect = 3.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -1 Query: 321 PRLCLGAVAHVHVLRLAQSSAALHERANLWSESGQ 217 P L L AV++V L + +LH+ A SESG+ Sbjct: 709 PALSLEAVSNVSRTALEDAERSLHKSATTTSESGK 743 >SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 26.6 bits (56), Expect = 3.2 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +2 Query: 365 CPNTITVGWPGQTRQTLPGLNPARSYALIG 454 C ++ + WPG +RQ L L+P ++ G Sbjct: 294 CFSSTPIPWPGFSRQALKNLSPMLHFSFHG 323 >SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 744 Score = 25.8 bits (54), Expect = 5.5 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = +2 Query: 347 RPPSNDCPNTITVGWPGQ-TRQTLPGLNPARSYALIGRATWSPRLAPARSPPWGTTSPPR 523 +PPS + Q TR+ + L+PA S A IG T+ P+ + + + P Sbjct: 183 KPPSQPAIPIVPSEMAAQVTRENISSLDPAISAASIGNVTFGQPNIPSTTTDFAGLAAPN 242 Query: 524 I 526 + Sbjct: 243 M 243 >SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1210 Score = 25.8 bits (54), Expect = 5.5 Identities = 13/49 (26%), Positives = 23/49 (46%) Frame = -1 Query: 516 GDVVPQGGLLAGASRGDHVALPIRAYERAGFNPGNVCRVCPGQPTVIVL 370 G++ + +L+ + LPIR ++ V VCP +P +VL Sbjct: 1067 GEIYLRNHILSDEMANNLSILPIRIQAWVSYDSEKVTTVCPREPFKLVL 1115 >SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 554 Score = 25.8 bits (54), Expect = 5.5 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Frame = +3 Query: 24 NFIIKLSRV-SPFAALIN*QRKLHEA 98 NF+ KLS + S AAL+N QRKL +A Sbjct: 509 NFLQKLSTLDSSLAALVNVQRKLIKA 534 >SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pombe|chr 3|||Manual Length = 351 Score = 25.8 bits (54), Expect = 5.5 Identities = 17/44 (38%), Positives = 20/44 (45%) Frame = -2 Query: 497 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYWG 366 A F P A+ L + E NV S T G +QLSYWG Sbjct: 48 ATFTPDLAKRLAVLVKMEK-NVMRSMEVTIRGRRDCARQLSYWG 90 >SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 652 Score = 25.4 bits (53), Expect = 7.3 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 385 WLARTDPADVARVESRT 435 WL TDP+ V+RVE T Sbjct: 419 WLQNTDPSTVSRVEVST 435 >SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces pombe|chr 1|||Manual Length = 805 Score = 25.4 bits (53), Expect = 7.3 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = -1 Query: 366 QSFE-GGLLLHQL*QCPRLCLGAVAH-VHVLRLAQSSAALHERAN-LWS 229 + FE G +++HQ+ CLG V+H LRL S A ++ ++ LW+ Sbjct: 682 EPFELGEVVIHQVIHTIEFCLGCVSHTASYLRLWALSLAHNQLSSVLWN 730 >SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription termination factor Reb1|Schizosaccharomyces pombe|chr 2|||Manual Length = 504 Score = 25.4 bits (53), Expect = 7.3 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -1 Query: 654 RRIRDFYADLRERRSHRTHREWYH 583 + IR FY++L ++ SHR + YH Sbjct: 278 KTIRMFYSNLYKKLSHRDAKSIYH 301 >SPCC162.08c |nup211||nuclear pore complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1837 Score = 25.4 bits (53), Expect = 7.3 Identities = 7/29 (24%), Positives = 18/29 (62%) Frame = +3 Query: 78 QRKLHEAFQDGVFYKERYEEMCSSGDWMQ 164 Q + + + + ++YK++YE+ C + +Q Sbjct: 402 QSSVSDLYSERLYYKQKYEQTCQEVERLQ 430 >SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1469 Score = 25.0 bits (52), Expect = 9.7 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +3 Query: 501 GELHLPPGLREGRVRQIPWLYERTHNVRDTIL 596 G +LP V Q+PWL R +RD IL Sbjct: 670 GSYNLPRSKGVSYVSQVPWL--RNATIRDNIL 699 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,762,243 Number of Sequences: 5004 Number of extensions: 57684 Number of successful extensions: 189 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 189 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 299817502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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