Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30873
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735... 35 0.066
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 34 0.087
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 33 0.27
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287... 31 1.1
08_02_0116 + 12762009-12763021,12763421-12763436 30 1.9
08_02_0083 + 12063349-12063406,12066151-12066480,12066529-120671... 30 1.9
07_03_0001 + 12219741-12219927,12219976-12220955 30 1.9
01_06_0640 + 30779457-30779623,30779707-30779828,30779959-307800... 29 3.3
12_01_0872 + 8326873-8327475,8328246-8328575 29 4.3
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476... 29 4.3
04_04_0462 + 25393733-25394347 29 4.3
02_02_0349 + 9237537-9238334 29 4.3
09_01_0013 - 355103-355435 28 5.7
06_03_0332 + 19652207-19652995 28 5.7
05_04_0116 + 18131510-18133192 28 5.7
04_03_0070 + 10677677-10679989 28 5.7
03_02_0111 + 5688649-5688942 28 5.7
02_03_0246 - 16807619-16808145,16808208-16808868 28 5.7
12_02_0528 + 20059613-20061472 28 7.6
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 28 7.6
02_05_0683 + 30877731-30878243 28 7.6
>04_04_0140 -
23073032-23073130,23073270-23073338,23073448-23073539,
23073637-23074550,23074646-23074779,23075003-23075058,
23077556-23077646
Length = 484
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 272 HRAALRSTNARTFGVRVASCGEGFVDPRRAVWWAARLHPI 153
HR+ L + V GEG +PRRA WW A H +
Sbjct: 35 HRSDLSMVTSSVLPKVVDDAGEGEANPRRAKWWYATFHSV 74
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 34.3 bits (75), Expect = 0.087
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = +2
Query: 416 PGLNPARSYALIGRATWSPRLAPARSPPWGTTSPPRITRRP 538
P PA S AL AT SPR A +PPW T PP I P
Sbjct: 91 PMPTPAASSAL-APATSSPRPASPPTPPWTTAPPPGIAAPP 130
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 470 PRLAPARSPPWGTTSPPRITRRPCPTD 550
P++ P SPP T SPP IT P P D
Sbjct: 616 PKITPYPSPPEVTPSPPEITPYPSPPD 642
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 470 PRLAPARSPPWGTTSPPRITRRPCPTD 550
P + P SPP T SPP IT P P +
Sbjct: 584 PEITPYPSPPEITPSPPEITPYPSPPE 610
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 470 PRLAPARSPPWGTTSPPRITRRPCPTD 550
P +AP SPP SPP IT P P +
Sbjct: 444 PEIAPYPSPPEIVPSPPEITPYPSPPE 470
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 470 PRLAPARSPPWGTTSPPRITRRPCPTD 550
P + P SPP SPP+IT P P +
Sbjct: 600 PEITPYPSPPEVVPSPPKITPYPSPPE 626
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 470 PRLAPARSPPWGTTSPPRITRRPCPTD 550
P + P SPP T PP IT P P +
Sbjct: 568 PEITPYPSPPEVTPGPPEITPYPSPPE 594
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 470 PRLAPARSPPWGTTSPPRITRRPCPTD 550
P + P SPP SPP IT P P +
Sbjct: 460 PEITPYPSPPEIVPSPPEITPYPSPPE 486
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 470 PRLAPARSPPWGTTSPPRITRRPCPTD 550
P + P SPP SPP IT P P +
Sbjct: 508 PEITPYPSPPEIVPSPPEITPYPSPPE 534
>01_06_1315 +
36226262-36226533,36227946-36228060,36228710-36228752,
36229953-36230329,36230330-36230481,36230591-36230838,
36230919-36231047,36231130-36231739,36231842-36232086,
36232195-36232325
Length = 773
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +2
Query: 392 PGQTRQTLPGLNPARSYALIGRATWSPRLA---PARSPPWGTTSPPRITRRPC 541
P T + + L P A G W+ +A PA PP +SPP + PC
Sbjct: 170 PSATTKPVQKLRPGSRTAWAGHPKWALPVAYEMPAPPPPHAASSPPLPSSSPC 222
>08_02_0116 + 12762009-12763021,12763421-12763436
Length = 342
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 129 NALYKKHHLEKPRAVF 82
N L K+HH+EKPR VF
Sbjct: 293 NGLRKEHHMEKPRTVF 308
>08_02_0083 +
12063349-12063406,12066151-12066480,12066529-12067174,
12089873-12089933
Length = 364
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 129 NALYKKHHLEKPRAVF 82
N L K+HH+EKPR VF
Sbjct: 300 NGLRKEHHMEKPRTVF 315
>07_03_0001 + 12219741-12219927,12219976-12220955
Length = 388
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 129 NALYKKHHLEKPRAVF 82
N L K+HH+EKPR VF
Sbjct: 232 NGLRKEHHMEKPRTVF 247
>01_06_0640 +
30779457-30779623,30779707-30779828,30779959-30780014,
30780147-30780254
Length = 150
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 395 GQTRQTLPGLNPARSYALIGRATWSPRLAPARSPPWGTTSPPRITRR 535
G R+ L GL A S + +P A ARSP S PR TRR
Sbjct: 6 GGARRALAGLRSASSSRAFSQP--APAAAAARSPELAAFSLPRSTRR 50
>12_01_0872 + 8326873-8327475,8328246-8328575
Length = 310
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -2
Query: 284 CSGWHRAALRSTNARTFGVRVASCGEGFVDPRRAVWWAARLHPIAT*AHLFVTLF 120
CS W S N +T + SC GF+D + W L+PI F++ F
Sbjct: 239 CSRW------SNNQQTLCFQCDSCKAGFLDDIKKAWSFDALYPILALVGAFLSCF 287
>07_01_0636 +
4761858-4762421,4763596-4763819,4763961-4764309,
4764648-4765331
Length = 606
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 419 GLNPARSYALIGRATWSPRLAPARSPPWG 505
G++P+R A +P LAPA +P WG
Sbjct: 163 GVSPSRVAVTAAAAEPTPALAPAPAPEWG 191
>04_04_0462 + 25393733-25394347
Length = 204
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 507 VPQGGLLAGASRGDHVALPIRAYERAGFNPGNVCRVC 397
VP GG G G H + +Y A G+V RVC
Sbjct: 96 VPPGGKAGGVCLGGHSVAAVVSYGGAFLGEGSVGRVC 132
>02_02_0349 + 9237537-9238334
Length = 265
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 246 RANLWSESGQLWGRLRRPSQSSLVGGAA 163
+A W GQ+WG R S GGAA
Sbjct: 25 QAGAWMRGGQIWGEPARGSGGLRTGGAA 52
>09_01_0013 - 355103-355435
Length = 110
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 431 ARSYALIGRATWSPRLAPARSPPW 502
AR A GR W PR P R P W
Sbjct: 28 ARGGAAGGRRAWRPRWRPQRRPRW 51
>06_03_0332 + 19652207-19652995
Length = 262
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 443 ALIGRATWSPRLAPARSPPWGTTSPPRITRRPCP 544
A I A SP ++P+ + PW R++R P P
Sbjct: 215 AAIDAAARSPAMSPSPTRPWTPERVARVSRSPSP 248
>05_04_0116 + 18131510-18133192
Length = 560
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = -1
Query: 321 PRLCLGAVAHVHVLRLAQSSAALHERANLWSESGQLWGRLRRPSQSSLVGGAAASNRHLS 142
P L AVA L S+ A H R S L G LRR +++ A ++ L+
Sbjct: 119 PPLATMAVAQNASLAAVASALAAHRRNQATHRSAALHGHLRRCAEALAASRPADADAELA 178
Query: 141 TSLRNALYKKHHLEKPRAVF 82
+ R A +++ A F
Sbjct: 179 SIARMASSDGDAVQRVAAAF 198
>04_03_0070 + 10677677-10679989
Length = 770
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +2
Query: 386 GWPGQTRQTLPGLNPARSYALIGRATWS-PRLAPARSPPWGTTSPPRITRRPC 541
G R+ L R+ A+ G+ W L P PP G+ PP+ R C
Sbjct: 29 GEEAAARKRYDALMQVRAKAVKGKGAWYWAHLEPVLVPPPGSGVPPKAARLRC 81
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 200 RSLPHSWPLSLQRFARSWSAALLCASRSTCTCATAPRQR-RGHCYS*CSSRPP 355
R+ P S RFA + AL + + AT P +R RG CY S PP
Sbjct: 9 RAAPSSLAAGAGRFAFACPTALPLTAAAAA--ATGPHRRGRGRCYCSASDAPP 59
>02_03_0246 - 16807619-16808145,16808208-16808868
Length = 395
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Frame = +2
Query: 374 TITVGWPGQTRQTLPGLN-------------PARSYALIG--RATWSPRLAPARSPPWGT 508
++++ WP TR LPGL+ P R G R SP +P +PP T
Sbjct: 82 SVSMSWPRMTRGRLPGLSRSCRSSRMAARCWPCRPPCCCGRRRRAASPSASPCTTPP-AT 140
Query: 509 TSPPRITRRPCP 544
PR + P P
Sbjct: 141 ARAPRTSSTPGP 152
>12_02_0528 + 20059613-20061472
Length = 619
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -1
Query: 234 WSESGQLWGRLRRPSQSSLVGGAAASNRHLSTSLRNALYKKHHLEK 97
W + GRL+R S L GAA N S N L K+ EK
Sbjct: 526 WGADDEELGRLKRCSSFELRSGAANGNHEPDLSWVNTLVKEPTPEK 571
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 479 APARSPPWGTTSPPRITRRPCPTDS 553
APA +PP +P R+ RRP T S
Sbjct: 13 APAAAPPSAVRTPRRLRRRPLKTAS 37
>02_05_0683 + 30877731-30878243
Length = 170
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 519 GGDVVPQGGLLAG-ASRGDHVALPIRAYERAGFNPGNVC 406
GG GG A A+RG VA+P+ A A + GN C
Sbjct: 126 GGSGASDGGSTAAMAARGSTVAVPVAAAAVARGSRGNTC 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,213,871
Number of Sequences: 37544
Number of extensions: 488747
Number of successful extensions: 1919
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1915
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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