BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30873 (660 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 149 1e-36 SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 103 2e-22 SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 56 3e-08 SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032) 31 0.63 SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 31 0.63 SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) 30 1.9 SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 29 2.5 SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16) 29 2.5 SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 29 3.4 SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) 29 3.4 SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6) 29 3.4 SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4 SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) 29 4.4 SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9 SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9 SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9 SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) 28 7.7 SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 28 7.7 SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 28 7.7 >SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) Length = 613 Score = 149 bits (362), Expect = 1e-36 Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Frame = +1 Query: 226 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 405 L KV+ FVE +A L P +H+CDGS+ E +A L +++NC+ TDP Sbjct: 14 LPKKVQEFVEENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDP 73 Query: 406 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPD-YEKAVSDRFPGCMKGRTMY 582 DVARVESRTFIC+ + D VP + G+ L ++S + ++K +R+PGCM GRTMY Sbjct: 74 QDVARVESRTFICTKCKDDAVPHFK-GKVGKLARWMSLEEAHKKLYEERYPGCMTGRTMY 132 Query: 583 VIPFSMGPVGSPLSKIGVEITDSPYV 660 V+PFSMGPVGSP+SKIG+++TDS YV Sbjct: 133 VLPFSMGPVGSPISKIGIQLTDSEYV 158 >SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) Length = 707 Score = 103 bits (246), Expect = 2e-22 Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 3/118 (2%) Frame = +1 Query: 223 TLTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTD 402 +L KV+ FV + LCQP+ +H+CDGS E ++ +L + +N ++ RTD Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTD 213 Query: 403 PADVARVESRTFICSDRESDVVPSARAGQKSA---LGNYISPPDYEKAVSDRFPGCMK 567 P DVARVES+TFIC++ E D VP + G+ LG ++S +A+ +RFPGCMK Sbjct: 214 PGDVARVESKTFICTENERDAVPDFKKGKDGVVGQLGRWLSVEKANQALGERFPGCMK 271 Score = 40.3 bits (90), Expect = 0.001 Identities = 15/22 (68%), Positives = 21/22 (95%) Frame = +1 Query: 595 SMGPVGSPLSKIGVEITDSPYV 660 +MGPVGSP++KIG+++TDS YV Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYV 342 >SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) Length = 549 Score = 56.0 bits (129), Expect = 3e-08 Identities = 23/28 (82%), Positives = 27/28 (96%) Frame = +1 Query: 577 MYVIPFSMGPVGSPLSKIGVEITDSPYV 660 MYV+PFSMGPVGSP+SKIG+E+TDS YV Sbjct: 1 MYVMPFSMGPVGSPISKIGIELTDSEYV 28 >SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032) Length = 227 Score = 31.5 bits (68), Expect = 0.63 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 441 YERAGFNPGNVCRVCPGQPTVIVLGQ 364 Y ++ FNP N CRVC + VLGQ Sbjct: 32 YAKSLFNPNNFCRVCNANTSKRVLGQ 57 >SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) Length = 3369 Score = 31.5 bits (68), Expect = 0.63 Identities = 16/51 (31%), Positives = 19/51 (37%) Frame = +2 Query: 269 CASRSTCTCATAPRQRRGHCYS*CSSRPPSNDCPNTITVGWPGQTRQTLPG 421 C + C C T RG YS C N C GW +Q +PG Sbjct: 2297 CVGPNVCKCMTG-FLGRGCTYSYCGKYTRCNTCNQDPNCGWCDSAQQCMPG 2346 >SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) Length = 287 Score = 29.9 bits (64), Expect = 1.9 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 435 RAGFNPGNVCRVCPGQPTVIVLGQ 364 ++ FNP N CR+C + VLGQ Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144 >SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) Length = 619 Score = 29.5 bits (63), Expect = 2.5 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Frame = +3 Query: 450 SGE-RRGPLGSRRPEVRPGELHLPPG-----LREGRVRQIPWLYERTHNVRDT 590 SGE RRG + + E+R + P G L GRV ++PW +++H+ DT Sbjct: 182 SGEPRRGYDSTSQAEIRRSQ-ESPQGGGQESLSRGRVPEVPWYEDQSHHSSDT 233 >SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16) Length = 1222 Score = 29.5 bits (63), Expect = 2.5 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = -1 Query: 189 QSSLVGGAAASNRHLSTSLRNALYKKHHLEKPRAVFVVNLSERQMEKHE 43 +SSL+ + A ++H LRN Y K +LE P + N+S +++ E Sbjct: 382 RSSLLSCSVAYHKHSEEFLRNIKYWKQYLEDPDLIKNSNVSTVEIKIQE 430 >SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) Length = 1819 Score = 29.1 bits (62), Expect = 3.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +2 Query: 482 PARSPPWGTTSPPRITRRPCPTDSLVV*K 568 P R P WGTT+ P T C S+V K Sbjct: 977 PTREPKWGTTAYPTSTFINCSASSVVTFK 1005 >SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) Length = 1532 Score = 29.1 bits (62), Expect = 3.4 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = +2 Query: 158 DAAAPPTKLLCEGRRSLPHSWPLSL---QRFA 244 D P T+LL +GRR PHS P S QRFA Sbjct: 1350 DPHRPTTRLLPQGRRWRPHSRPSSAFRRQRFA 1381 >SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6) Length = 302 Score = 29.1 bits (62), Expect = 3.4 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = -1 Query: 546 VGHGLLVIRGGDVVPQGGLLAGASRGDHVALPIRAYERAGFNPGN 412 VG LL++ GG VV A A H ALP R +PGN Sbjct: 159 VGVVLLIVNGGVVVGVECTGASAVHESHAALPALPSHRQHTSPGN 203 >SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 218 Score = 29.1 bits (62), Expect = 3.4 Identities = 23/63 (36%), Positives = 32/63 (50%) Frame = +1 Query: 454 ESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPLSKIG 633 ES P R Q S L N P + + +S+ + R M +I FS+GPVGS L IG Sbjct: 51 ESSNKPPIRLKQPSQLVNL---PTH-RGMSEGETKATRMRNM-LIEFSLGPVGSTLGAIG 105 Query: 634 VEI 642 ++ Sbjct: 106 PQV 108 >SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) Length = 668 Score = 28.7 bits (61), Expect = 4.4 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 522 RGGDVVPQGGLLAGASRGDHVALPI 448 R GDV+P GG + RGD V + I Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLI 550 >SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1717 Score = 28.3 bits (60), Expect = 5.9 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -1 Query: 558 TRESVGHGLLVIRGGDVVPQGGLLAGASRGDHV 460 T GHG + + GG V GG AG G HV Sbjct: 319 TMNMTGHGEVNVNGGSVTGSGGGGAGGRIGIHV 351 >SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 867 Score = 28.3 bits (60), Expect = 5.9 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +1 Query: 436 FICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMKGR 573 F S+R SD+VP Q ++ I PP + SD P + R Sbjct: 546 FCVSNRLSDIVPMGSPAQSPSVFRRIPPPPLPDSESDSSPPAIPER 591 >SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1798 Score = 28.3 bits (60), Expect = 5.9 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -1 Query: 516 GDVVPQGGLLAGASRGDHVALPIRAY 439 G +VP GG + +RG+H P RA+ Sbjct: 865 GKMVPGGGRVNNPNRGEHYIFPCRAW 890 >SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) Length = 373 Score = 27.9 bits (59), Expect = 7.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 386 GWPGQTRQTLPGLNPARSYALIGRATWSPRLAPARS 493 G PGQ R+++ P S I R T SPR P R+ Sbjct: 41 GTPGQRRKSVAVTPPRLSTPHIQRGTASPRSVPPRT 76 >SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2211 Score = 27.9 bits (59), Expect = 7.7 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = -1 Query: 303 AVAHVHVLRLAQSSAALHERANLWSESGQLWGRLRRPSQSSLVGGAAASNRHLSTSLRNA 124 A+ H + L++ + +A + +LW RLR P +LVG R++ +L + Sbjct: 1332 AILHDYGAELSEERMKEYMKALKTKKLSKLWFRLRHPYTIALVGRLGEVERNVGKALTHD 1391 Query: 123 LYKKHHLEKPR 91 K+ E R Sbjct: 1392 DVKRMSAEDLR 1402 >SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 769 Score = 27.9 bits (59), Expect = 7.7 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = +2 Query: 263 LLCASRSTCTCATAPRQRRGHCYS*CSSRPPSNDCPNTITVGWPGQTRQTLP 418 +LC T Q R H + CS PS+ P +TVG P R+ P Sbjct: 406 MLCYLSITGAANAVYCQGRYHLSTECSHIDPSSSQPCQVTVGSPPDDRREYP 457 >SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) Length = 820 Score = 27.9 bits (59), Expect = 7.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 386 GWPGQTRQTLPGLNPARSYALIGRATWSPRLAPARS 493 G PGQ R+++ P S I R T SPR P R+ Sbjct: 41 GTPGQRRKSVAVTPPRLSAPHIQRGTASPRSVPPRT 76 >SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 796 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/30 (40%), Positives = 13/30 (43%) Frame = +2 Query: 464 WSPRLAPARSPPWGTTSPPRITRRPCPTDS 553 W PRL P P +P I R C T S Sbjct: 146 WEPRLYPLAQPDLNYAAPEFILSRTCDTSS 175 >SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) Length = 921 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +1 Query: 457 SDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM-KGRTMYVIPFSMGPVGS 615 S ++ + G++ LGN++ D E+ + + GC+ G + +P ++ PV + Sbjct: 435 SRILHALNGGEQRVLGNHVDGYDPERRIIYEYMGCIWHGCSNCYLPDTVNPVNN 488 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,392,268 Number of Sequences: 59808 Number of extensions: 511001 Number of successful extensions: 1642 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1444 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1640 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1693527500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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