SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30873
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                      149   1e-36
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                       103   2e-22
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                       56   3e-08
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)                  31   0.63 
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  31   0.63 
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)                    30   1.9  
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)                   29   2.5  
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   2.5  
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   29   3.4  
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)                 29   3.4  
SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)                     29   3.4  
SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)                     29   4.4  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)                28   7.7  
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 28   7.7  
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            28   7.7  

>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score =  149 bits (362), Expect = 1e-36
 Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
 Frame = +1

Query: 226 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 405
           L  KV+ FVE +A L  P  +H+CDGS+ E +A             L +++NC+   TDP
Sbjct: 14  LPKKVQEFVEENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDP 73

Query: 406 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPD-YEKAVSDRFPGCMKGRTMY 582
            DVARVESRTFIC+  + D VP  + G+   L  ++S  + ++K   +R+PGCM GRTMY
Sbjct: 74  QDVARVESRTFICTKCKDDAVPHFK-GKVGKLARWMSLEEAHKKLYEERYPGCMTGRTMY 132

Query: 583 VIPFSMGPVGSPLSKIGVEITDSPYV 660
           V+PFSMGPVGSP+SKIG+++TDS YV
Sbjct: 133 VLPFSMGPVGSPISKIGIQLTDSEYV 158


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score =  103 bits (246), Expect = 2e-22
 Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
 Frame = +1

Query: 223 TLTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTD 402
           +L  KV+ FV  +  LCQP+ +H+CDGS  E ++            +L + +N ++ RTD
Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTD 213

Query: 403 PADVARVESRTFICSDRESDVVPSARAGQKSA---LGNYISPPDYEKAVSDRFPGCMK 567
           P DVARVES+TFIC++ E D VP  + G+      LG ++S     +A+ +RFPGCMK
Sbjct: 214 PGDVARVESKTFICTENERDAVPDFKKGKDGVVGQLGRWLSVEKANQALGERFPGCMK 271



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/22 (68%), Positives = 21/22 (95%)
 Frame = +1

Query: 595 SMGPVGSPLSKIGVEITDSPYV 660
           +MGPVGSP++KIG+++TDS YV
Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYV 342


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 23/28 (82%), Positives = 27/28 (96%)
 Frame = +1

Query: 577 MYVIPFSMGPVGSPLSKIGVEITDSPYV 660
           MYV+PFSMGPVGSP+SKIG+E+TDS YV
Sbjct: 1   MYVMPFSMGPVGSPISKIGIELTDSEYV 28


>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
          Length = 227

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 441 YERAGFNPGNVCRVCPGQPTVIVLGQ 364
           Y ++ FNP N CRVC    +  VLGQ
Sbjct: 32  YAKSLFNPNNFCRVCNANTSKRVLGQ 57


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +2

Query: 269  CASRSTCTCATAPRQRRGHCYS*CSSRPPSNDCPNTITVGWPGQTRQTLPG 421
            C   + C C T     RG  YS C      N C      GW    +Q +PG
Sbjct: 2297 CVGPNVCKCMTG-FLGRGCTYSYCGKYTRCNTCNQDPNCGWCDSAQQCMPG 2346


>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
          Length = 287

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 435 RAGFNPGNVCRVCPGQPTVIVLGQ 364
           ++ FNP N CR+C    +  VLGQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144


>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
          Length = 619

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +3

Query: 450 SGE-RRGPLGSRRPEVRPGELHLPPG-----LREGRVRQIPWLYERTHNVRDT 590
           SGE RRG   + + E+R  +   P G     L  GRV ++PW  +++H+  DT
Sbjct: 182 SGEPRRGYDSTSQAEIRRSQ-ESPQGGGQESLSRGRVPEVPWYEDQSHHSSDT 233


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 189 QSSLVGGAAASNRHLSTSLRNALYKKHHLEKPRAVFVVNLSERQMEKHE 43
           +SSL+  + A ++H    LRN  Y K +LE P  +   N+S  +++  E
Sbjct: 382 RSSLLSCSVAYHKHSEEFLRNIKYWKQYLEDPDLIKNSNVSTVEIKIQE 430


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 482  PARSPPWGTTSPPRITRRPCPTDSLVV*K 568
            P R P WGTT+ P  T   C   S+V  K
Sbjct: 977  PTREPKWGTTAYPTSTFINCSASSVVTFK 1005


>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
          Length = 1532

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 158  DAAAPPTKLLCEGRRSLPHSWPLSL---QRFA 244
            D   P T+LL +GRR  PHS P S    QRFA
Sbjct: 1350 DPHRPTTRLLPQGRRWRPHSRPSSAFRRQRFA 1381


>SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)
          Length = 302

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -1

Query: 546 VGHGLLVIRGGDVVPQGGLLAGASRGDHVALPIRAYERAGFNPGN 412
           VG  LL++ GG VV      A A    H ALP     R   +PGN
Sbjct: 159 VGVVLLIVNGGVVVGVECTGASAVHESHAALPALPSHRQHTSPGN 203


>SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/63 (36%), Positives = 32/63 (50%)
 Frame = +1

Query: 454 ESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPLSKIG 633
           ES   P  R  Q S L N    P + + +S+      + R M +I FS+GPVGS L  IG
Sbjct: 51  ESSNKPPIRLKQPSQLVNL---PTH-RGMSEGETKATRMRNM-LIEFSLGPVGSTLGAIG 105

Query: 634 VEI 642
            ++
Sbjct: 106 PQV 108


>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
          Length = 668

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 522 RGGDVVPQGGLLAGASRGDHVALPI 448
           R GDV+P GG    + RGD V + I
Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLI 550


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 558 TRESVGHGLLVIRGGDVVPQGGLLAGASRGDHV 460
           T    GHG + + GG V   GG  AG   G HV
Sbjct: 319 TMNMTGHGEVNVNGGSVTGSGGGGAGGRIGIHV 351


>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 436 FICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMKGR 573
           F  S+R SD+VP     Q  ++   I PP    + SD  P  +  R
Sbjct: 546 FCVSNRLSDIVPMGSPAQSPSVFRRIPPPPLPDSESDSSPPAIPER 591


>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1798

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 516 GDVVPQGGLLAGASRGDHVALPIRAY 439
           G +VP GG +   +RG+H   P RA+
Sbjct: 865 GKMVPGGGRVNNPNRGEHYIFPCRAW 890


>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
          Length = 373

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 386 GWPGQTRQTLPGLNPARSYALIGRATWSPRLAPARS 493
           G PGQ R+++    P  S   I R T SPR  P R+
Sbjct: 41  GTPGQRRKSVAVTPPRLSTPHIQRGTASPRSVPPRT 76


>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -1

Query: 303  AVAHVHVLRLAQSSAALHERANLWSESGQLWGRLRRPSQSSLVGGAAASNRHLSTSLRNA 124
            A+ H +   L++     + +A    +  +LW RLR P   +LVG      R++  +L + 
Sbjct: 1332 AILHDYGAELSEERMKEYMKALKTKKLSKLWFRLRHPYTIALVGRLGEVERNVGKALTHD 1391

Query: 123  LYKKHHLEKPR 91
              K+   E  R
Sbjct: 1392 DVKRMSAEDLR 1402


>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 263 LLCASRSTCTCATAPRQRRGHCYS*CSSRPPSNDCPNTITVGWPGQTRQTLP 418
           +LC    T        Q R H  + CS   PS+  P  +TVG P   R+  P
Sbjct: 406 MLCYLSITGAANAVYCQGRYHLSTECSHIDPSSSQPCQVTVGSPPDDRREYP 457


>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 386 GWPGQTRQTLPGLNPARSYALIGRATWSPRLAPARS 493
           G PGQ R+++    P  S   I R T SPR  P R+
Sbjct: 41  GTPGQRRKSVAVTPPRLSAPHIQRGTASPRSVPPRT 76


>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 464 WSPRLAPARSPPWGTTSPPRITRRPCPTDS 553
           W PRL P   P     +P  I  R C T S
Sbjct: 146 WEPRLYPLAQPDLNYAAPEFILSRTCDTSS 175


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 457 SDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM-KGRTMYVIPFSMGPVGS 615
           S ++ +   G++  LGN++   D E+ +   + GC+  G +   +P ++ PV +
Sbjct: 435 SRILHALNGGEQRVLGNHVDGYDPERRIIYEYMGCIWHGCSNCYLPDTVNPVNN 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,392,268
Number of Sequences: 59808
Number of extensions: 511001
Number of successful extensions: 1642
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -