Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30873
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 149 1e-36
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 103 2e-22
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 56 3e-08
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032) 31 0.63
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 31 0.63
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) 30 1.9
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 29 2.5
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16) 29 2.5
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 29 3.4
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) 29 3.4
SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6) 29 3.4
SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) 29 4.4
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) 28 7.7
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 28 7.7
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 28 7.7
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 149 bits (362), Expect = 1e-36
Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Frame = +1
Query: 226 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTDP 405
L KV+ FVE +A L P +H+CDGS+ E +A L +++NC+ TDP
Sbjct: 14 LPKKVQEFVEENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDP 73
Query: 406 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPD-YEKAVSDRFPGCMKGRTMY 582
DVARVESRTFIC+ + D VP + G+ L ++S + ++K +R+PGCM GRTMY
Sbjct: 74 QDVARVESRTFICTKCKDDAVPHFK-GKVGKLARWMSLEEAHKKLYEERYPGCMTGRTMY 132
Query: 583 VIPFSMGPVGSPLSKIGVEITDSPYV 660
V+PFSMGPVGSP+SKIG+++TDS YV
Sbjct: 133 VLPFSMGPVGSPISKIGIQLTDSEYV 158
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 103 bits (246), Expect = 2e-22
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +1
Query: 223 TLTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPQYDNCWLARTD 402
+L KV+ FV + LCQP+ +H+CDGS E ++ +L + +N ++ RTD
Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTD 213
Query: 403 PADVARVESRTFICSDRESDVVPSARAGQKSA---LGNYISPPDYEKAVSDRFPGCMK 567
P DVARVES+TFIC++ E D VP + G+ LG ++S +A+ +RFPGCMK
Sbjct: 214 PGDVARVESKTFICTENERDAVPDFKKGKDGVVGQLGRWLSVEKANQALGERFPGCMK 271
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +1
Query: 595 SMGPVGSPLSKIGVEITDSPYV 660
+MGPVGSP++KIG+++TDS YV
Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYV 342
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/28 (82%), Positives = 27/28 (96%)
Frame = +1
Query: 577 MYVIPFSMGPVGSPLSKIGVEITDSPYV 660
MYV+PFSMGPVGSP+SKIG+E+TDS YV
Sbjct: 1 MYVMPFSMGPVGSPISKIGIELTDSEYV 28
>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
Length = 227
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 441 YERAGFNPGNVCRVCPGQPTVIVLGQ 364
Y ++ FNP N CRVC + VLGQ
Sbjct: 32 YAKSLFNPNNFCRVCNANTSKRVLGQ 57
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +2
Query: 269 CASRSTCTCATAPRQRRGHCYS*CSSRPPSNDCPNTITVGWPGQTRQTLPG 421
C + C C T RG YS C N C GW +Q +PG
Sbjct: 2297 CVGPNVCKCMTG-FLGRGCTYSYCGKYTRCNTCNQDPNCGWCDSAQQCMPG 2346
>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
Length = 287
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 435 RAGFNPGNVCRVCPGQPTVIVLGQ 364
++ FNP N CR+C + VLGQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144
>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
Length = 619
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +3
Query: 450 SGE-RRGPLGSRRPEVRPGELHLPPG-----LREGRVRQIPWLYERTHNVRDT 590
SGE RRG + + E+R + P G L GRV ++PW +++H+ DT
Sbjct: 182 SGEPRRGYDSTSQAEIRRSQ-ESPQGGGQESLSRGRVPEVPWYEDQSHHSSDT 233
>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
Length = 1222
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 189 QSSLVGGAAASNRHLSTSLRNALYKKHHLEKPRAVFVVNLSERQMEKHE 43
+SSL+ + A ++H LRN Y K +LE P + N+S +++ E
Sbjct: 382 RSSLLSCSVAYHKHSEEFLRNIKYWKQYLEDPDLIKNSNVSTVEIKIQE 430
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 482 PARSPPWGTTSPPRITRRPCPTDSLVV*K 568
P R P WGTT+ P T C S+V K
Sbjct: 977 PTREPKWGTTAYPTSTFINCSASSVVTFK 1005
>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
Length = 1532
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 158 DAAAPPTKLLCEGRRSLPHSWPLSL---QRFA 244
D P T+LL +GRR PHS P S QRFA
Sbjct: 1350 DPHRPTTRLLPQGRRWRPHSRPSSAFRRQRFA 1381
>SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)
Length = 302
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -1
Query: 546 VGHGLLVIRGGDVVPQGGLLAGASRGDHVALPIRAYERAGFNPGN 412
VG LL++ GG VV A A H ALP R +PGN
Sbjct: 159 VGVVLLIVNGGVVVGVECTGASAVHESHAALPALPSHRQHTSPGN 203
>SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +1
Query: 454 ESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPLSKIG 633
ES P R Q S L N P + + +S+ + R M +I FS+GPVGS L IG
Sbjct: 51 ESSNKPPIRLKQPSQLVNL---PTH-RGMSEGETKATRMRNM-LIEFSLGPVGSTLGAIG 105
Query: 634 VEI 642
++
Sbjct: 106 PQV 108
>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
Length = 668
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 522 RGGDVVPQGGLLAGASRGDHVALPI 448
R GDV+P GG + RGD V + I
Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLI 550
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 558 TRESVGHGLLVIRGGDVVPQGGLLAGASRGDHV 460
T GHG + + GG V GG AG G HV
Sbjct: 319 TMNMTGHGEVNVNGGSVTGSGGGGAGGRIGIHV 351
>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 436 FICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMKGR 573
F S+R SD+VP Q ++ I PP + SD P + R
Sbjct: 546 FCVSNRLSDIVPMGSPAQSPSVFRRIPPPPLPDSESDSSPPAIPER 591
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 516 GDVVPQGGLLAGASRGDHVALPIRAY 439
G +VP GG + +RG+H P RA+
Sbjct: 865 GKMVPGGGRVNNPNRGEHYIFPCRAW 890
>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
Length = 373
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 386 GWPGQTRQTLPGLNPARSYALIGRATWSPRLAPARS 493
G PGQ R+++ P S I R T SPR P R+
Sbjct: 41 GTPGQRRKSVAVTPPRLSTPHIQRGTASPRSVPPRT 76
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = -1
Query: 303 AVAHVHVLRLAQSSAALHERANLWSESGQLWGRLRRPSQSSLVGGAAASNRHLSTSLRNA 124
A+ H + L++ + +A + +LW RLR P +LVG R++ +L +
Sbjct: 1332 AILHDYGAELSEERMKEYMKALKTKKLSKLWFRLRHPYTIALVGRLGEVERNVGKALTHD 1391
Query: 123 LYKKHHLEKPR 91
K+ E R
Sbjct: 1392 DVKRMSAEDLR 1402
>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 263 LLCASRSTCTCATAPRQRRGHCYS*CSSRPPSNDCPNTITVGWPGQTRQTLP 418
+LC T Q R H + CS PS+ P +TVG P R+ P
Sbjct: 406 MLCYLSITGAANAVYCQGRYHLSTECSHIDPSSSQPCQVTVGSPPDDRREYP 457
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 386 GWPGQTRQTLPGLNPARSYALIGRATWSPRLAPARS 493
G PGQ R+++ P S I R T SPR P R+
Sbjct: 41 GTPGQRRKSVAVTPPRLSAPHIQRGTASPRSVPPRT 76
>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 464 WSPRLAPARSPPWGTTSPPRITRRPCPTDS 553
W PRL P P +P I R C T S
Sbjct: 146 WEPRLYPLAQPDLNYAAPEFILSRTCDTSS 175
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 457 SDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM-KGRTMYVIPFSMGPVGS 615
S ++ + G++ LGN++ D E+ + + GC+ G + +P ++ PV +
Sbjct: 435 SRILHALNGGEQRVLGNHVDGYDPERRIIYEYMGCIWHGCSNCYLPDTVNPVNN 488
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,392,268
Number of Sequences: 59808
Number of extensions: 511001
Number of successful extensions: 1642
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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