Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30873
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19250.1 68416.m02442 hypothetical protein                          31   0.51 
At5g24316.1 68418.m02864 proline-rich family protein contains pr...    30   1.2  
At1g44880.1 68414.m05142 Ulp1 protease family protein similar to...    29   2.7  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    28   4.8  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    28   4.8  
At3g04740.1 68416.m00510 expressed protein (SWP1)                      28   6.3  
At4g12070.1 68417.m01919 expressed protein                             27   8.4  
At3g22270.1 68416.m02815 expressed protein                             27   8.4  

>At3g19250.1 68416.m02442 hypothetical protein
          Length = 398

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -1

Query: 315 LCLGAVAHVHVLRLAQSSAALHERANLWSESGQLWGRLRRPSQ--SSLVGGAAASNRHLS 142
           LC G + H+H L + +SS+A   R  L   S QL  R    +     L  G+ AS  +LS
Sbjct: 18  LCPGLIQHIHTLSIDESSSAFRCRTVL--PSSQLLQRALSATTIFPILPQGSVASTFNLS 75

Query: 141 TSLRNALYKKHHLEKPRAVFVVNLSERQME 52
             L +A     + +    + V++ ++  +E
Sbjct: 76  HELAHAFQTPSYHDIRSRLLVIDPTQENLE 105


>At5g24316.1 68418.m02864 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 125

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 464 WSPRLAPARSPPWGTTSPPRITRRP 538
           WSPR  P R  P+    PP  TRRP
Sbjct: 95  WSPRPIPKRPMPYVPPPPPPPTRRP 119


>At1g44880.1 68414.m05142 Ulp1 protease family protein similar to
           At5g28170, At1g35110, At3g42530, At4g19320, At5g36020,
           At4g03970, At3g43010, At2g10350; contains Pfam profile
           PF02902: Ulp1 protease family, C-terminal catalytic
           domain
          Length = 1038

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 497 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSY 372
           +D  PAR  G  +LS +EHM V  S  +    +   NQ+ ++
Sbjct: 842 SDSSPARERGKPTLSEAEHMEVLVSLLSQKLATTLTNQRAAF 883


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +2

Query: 377 ITVGWPGQTRQTLPGLNPARSYALIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTD 550
           +  G  GQ   + P   PA           +P   P  +PP  TTSPP +T  P P +
Sbjct: 14  LIAGVTGQAPTSPPTATPAPPTPTTPPPAATP--PPVSAPPPVTTSPPPVTTAPPPAN 69


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +2

Query: 377 ITVGWPGQTRQTLPGLNPARSYALIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTD 550
           +  G  GQ   + P   PA           +P   P  +PP  TTSPP +T  P P +
Sbjct: 14  LIAGVTGQAPTSPPTATPAPPTPTTPPPAATP--PPVSAPPPVTTSPPPVTTAPPPAN 69


>At3g04740.1 68416.m00510 expressed protein (SWP1)
          Length = 1703

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +3

Query: 111  VFYKERY--EEMCSSGD--WMQPRRPPNCSARVDEAFP 212
            + Y++R+  +  C +GD  W+QP  PP   A +  + P
Sbjct: 1232 IIYRKRFAVDMRCFAGDQVWLQPATPPKGGASIGGSLP 1269


>At4g12070.1 68417.m01919 expressed protein
          Length = 483

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 412 VARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDR 549
           V RV   +   SD  + +VP+  AG++  +   I  P+Y    SDR
Sbjct: 86  VVRVRRGSDDFSDLSACIVPNESAGKRQYMLRSIDDPNYTVGFSDR 131


>At3g22270.1 68416.m02815 expressed protein
          Length = 782

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 468 PLGSRRPEVRPGELHLPPGLREG 536
           P G+R P+  PG LH  P L  G
Sbjct: 187 PPGNRSPQASPGNLHRAPSLPGG 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,342
Number of Sequences: 28952
Number of extensions: 339052
Number of successful extensions: 1161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)