BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30871 (680 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 142 3e-35 SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 29 0.47 SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 29 0.47 SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 28 1.1 SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.5 SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 4.4 SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 4.4 SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 5.8 SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 7.7 SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 7.7 >SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces pombe|chr 1|||Manual Length = 421 Score = 142 bits (345), Expect = 3e-35 Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 3/195 (1%) Frame = +3 Query: 51 RLPERYGAGEKSVWVEYIQLAAEYK-PAVNLGQGFPDYHAPKHVTEALSQIATSENPLLH 227 R + A VW Q AE K P V+L QGF +Y+ PK V +A + + + + Sbjct: 7 RPSNKVAASRPDVWTLVNQATAECKVPPVSLSQGFFNYNPPKFVLDAAKK--SIDEVACN 64 Query: 228 QYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIII 407 QY+ G P L + LS+ YSP R ++ EI+VT+GA E +S ++ GDEVI++ Sbjct: 65 QYSHTRGRPSLRKALSEAYSPYFKRTLNPDTEIVVTAGANEGFFSVFAAFLNPGDEVIVM 124 Query: 408 EPYFDCYDFMVKCAGGVPRFIALKPKPQGD--DISSADWVLDEAELASLFNNRTKMIIVN 581 EP+FD Y + GGVP ++ + P +G +S+ W LD +L + +TKMI++N Sbjct: 125 EPFFDQYISNITMNGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVIN 184 Query: 582 TPHNPLGKVFTQREL 626 TPHNPLGK+F++ EL Sbjct: 185 TPHNPLGKIFSEEEL 199 >SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein Sec23a|Schizosaccharomyces pombe|chr 3|||Manual Length = 759 Score = 29.5 bits (63), Expect = 0.47 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 315 FNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFI-ALKPKP 488 F ++ S A Y +L H D + +I+I+P + F + GGVP + A+ KP Sbjct: 583 FLQVFNNSPDETAFYRHMLNHEDVNNSLIMIQPTLQSFSF--EHPGGVPVLLDAVSVKP 639 >SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1210 Score = 29.5 bits (63), Expect = 0.47 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +3 Query: 159 YHAPKHVTEALSQIATSENP-LLHQYTRGFGLPRLVENLSKVYSPLIGRQ 305 Y P +T+ L I +SEN L+HQ R GLP+ +E +Y+P RQ Sbjct: 604 YWDPFMITD-LKFIGSSENAELIHQRLRN-GLPKSIEKGPFIYNPFNRRQ 651 >SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr 1|||Manual Length = 232 Score = 28.3 bits (60), Expect = 1.1 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +3 Query: 483 KPQGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRE 623 KP DD+ D +LD+ ++ S F N K I H G + E Sbjct: 21 KPNFDDLDDLDDILDDLDVPSAFKNEEKKNI--DEHKQTGNTSKENE 65 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 27.1 bits (57), Expect = 2.5 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +3 Query: 219 LLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTS 338 LL RG G R E+L K PL+ ++AFN +L+++ Sbjct: 720 LLRALFRGIGGGRF-ESLYKEVMPLLHALLEAFNSLLISA 758 >SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1469 Score = 26.2 bits (55), Expect = 4.4 Identities = 9/31 (29%), Positives = 18/31 (58%) Frame = +3 Query: 498 DISSADWVLDEAELASLFNNRTKMIIVNTPH 590 DI +++W+ +SL NRT +++ + H Sbjct: 771 DIHTSNWIYKHCFQSSLMENRTVILVTHNVH 801 >SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr 2|||Manual Length = 959 Score = 26.2 bits (55), Expect = 4.4 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +3 Query: 258 LVENLSKVYSPL--IGRQIDAFNEILVTSGAYEALYSTILGHVDTG--DEVIIIEPYFDC 425 ++E + K S L + ++ID + L A++ LYS +L V G D + ++E +C Sbjct: 536 VIEIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYAGDTDSIDVLEDIDNC 595 Query: 426 Y 428 Y Sbjct: 596 Y 596 >SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 274 Score = 25.8 bits (54), Expect = 5.8 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +3 Query: 255 RLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDE 395 R++ N++K + I +D FNE+ + L + GHVD DE Sbjct: 74 RVLRNVNKKFEGDIKNCLDGFNELNDPIVQEKILRAFEQGHVDEEDE 120 >SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 703 Score = 25.4 bits (53), Expect = 7.7 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +3 Query: 192 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEIL 329 S + T N L T FG L + V + L+ R+I+ F E+L Sbjct: 460 STLNTFMNELNSSMTSAFGDTFLASTVQNVMNCLLYRKIENFEEVL 505 >SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces pombe|chr 1|||Manual Length = 216 Score = 25.4 bits (53), Expect = 7.7 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +3 Query: 579 NTPHNPLGKVFTQREL 626 N H P GK FTQREL Sbjct: 54 NPIHEPNGKKFTQREL 69 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,920,548 Number of Sequences: 5004 Number of extensions: 60248 Number of successful extensions: 173 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 172 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 313902888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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