BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30871 (680 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12) 107 6e-24 SB_13032| Best HMM Match : Aminotran_1_2 (HMM E-Value=3e-06) 53 2e-07 SB_45852| Best HMM Match : I-set (HMM E-Value=0) 29 4.6 SB_21095| Best HMM Match : RnaseH (HMM E-Value=4.7) 29 4.6 SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) 29 4.6 SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.6 SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1 SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30) 28 6.1 SB_41081| Best HMM Match : DUF1014 (HMM E-Value=2.9) 28 6.1 SB_19735| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.091) 28 6.1 SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7) 28 6.1 SB_33139| Best HMM Match : EGF_2 (HMM E-Value=6.1) 28 8.0 >SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12) Length = 398 Score = 107 bits (258), Expect = 6e-24 Identities = 67/162 (41%), Positives = 92/162 (56%), Gaps = 1/162 (0%) Frame = +3 Query: 147 GFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEI 326 GFPD H+ AL + A+S+N L QYTR G PRLV L+ Sbjct: 101 GFPDIAPESHIKAALIEAASSDNVALCQYTRSEGHPRLVNALA----------------- 143 Query: 327 LVTSGAYEALYSTILGH-VDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGDDI 503 A+Y+ + G ++ EVI+IEP+FDCY V AGG P +I L+PK Sbjct: 144 --------AMYTKLQGREINALTEVILIEPFFDCYAPQVTSAGGKPVYIPLRPKEGAT-- 193 Query: 504 SSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELE 629 SS D++LD EL S F+++TK +++NTP+NPLGKVF++ ELE Sbjct: 194 SSKDFLLDPEELESKFSSKTKAMVINTPNNPLGKVFSRSELE 235 Score = 30.7 bits (66), Expect = 1.1 Identities = 10/17 (58%), Positives = 16/17 (94%) Frame = +1 Query: 628 KLIADLCKKHNVLCLSD 678 ++IA+LC +HN+LC+SD Sbjct: 235 EMIANLCIRHNILCISD 251 >SB_13032| Best HMM Match : Aminotran_1_2 (HMM E-Value=3e-06) Length = 277 Score = 52.8 bits (121), Expect = 2e-07 Identities = 44/165 (26%), Positives = 77/165 (46%) Frame = +3 Query: 132 VNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQID 311 +N+GQ PD P+ +A+ + N + +Y+ G E LS Y ID Sbjct: 36 LNIGQ--PDIKTPQVALDAVK----NANIEVLEYSHSAGFDSYREKLSGYYKNQ-NLPID 88 Query: 312 AFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQ 491 +I++T+G EAL + +D+ DEVII EP++ Y+ +G +K P Sbjct: 89 K-QDIIITTGGSEALLFALGSVMDSDDEVIIPEPFYANYNGFAVASG-------VKVVPV 140 Query: 492 GDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQREL 626 I + + + L ++TK I++ P NP G ++++ E+ Sbjct: 141 ISSIETGFALPPIEDFEKLITSKTKAILICNPGNPTGYLYSEEEI 185 >SB_45852| Best HMM Match : I-set (HMM E-Value=0) Length = 1122 Score = 28.7 bits (61), Expect = 4.6 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = -3 Query: 348 HRHHS*LGFH*RHLSVVQSAGSKP 277 H HH+ +H RH ++ G+KP Sbjct: 1053 HHHHTHYNYHYRHFLIIDRPGNKP 1076 >SB_21095| Best HMM Match : RnaseH (HMM E-Value=4.7) Length = 289 Score = 28.7 bits (61), Expect = 4.6 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +3 Query: 489 QGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELE--THCRSVQEAQR 662 +G+ ++ A W LD+ F ++V T H PL K+F R L+ T+ R + QR Sbjct: 103 EGEALAVA-WGLDQTRY---FTQGCDNLVVVTDHKPLVKIFGDRTLDEITNSRLFRLKQR 158 Query: 663 ALSLR 677 L R Sbjct: 159 TLPRR 163 >SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) Length = 1037 Score = 28.7 bits (61), Expect = 4.6 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +3 Query: 243 FGLPRLVENLSKVYSPLIGRQIDAFNEILVTSG 341 F P L+ L+K+ + G+Q++ +IL TSG Sbjct: 156 FAAPNLLAQLAKLLDFIHGKQVEELEDILSTSG 188 >SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) Length = 3369 Score = 28.7 bits (61), Expect = 4.6 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -1 Query: 671 RQSTLCFLHRSAMSFQLALGEHLAQRIVGRVHDDHFSSVV 552 R + L+ SF L HL ++ G VH+DH S VV Sbjct: 2446 RYAVTLMLNPDEPSFVEGLRNHLWKQFPGMVHEDHGSQVV 2485 >SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1112 Score = 28.3 bits (60), Expect = 6.1 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +3 Query: 351 ALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQ 491 A+ ST G +D G I+P+ D D+ G + A+KP Q Sbjct: 78 AVISTYSGFIDDGKSRFYIQPHDDKQDYYPYQGTGAHKVYAVKPLDQ 124 >SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30) Length = 426 Score = 28.3 bits (60), Expect = 6.1 Identities = 9/31 (29%), Positives = 20/31 (64%) Frame = +3 Query: 336 SGAYEALYSTILGHVDTGDEVIIIEPYFDCY 428 SG ++ L ++G + TG+ +++I Y+ C+ Sbjct: 263 SGPWQDLAIDLMGPMPTGENLLVIVDYYSCF 293 >SB_41081| Best HMM Match : DUF1014 (HMM E-Value=2.9) Length = 340 Score = 28.3 bits (60), Expect = 6.1 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +3 Query: 381 DTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGDDISSADWVLDEAE 536 D+ DEV + +P D + + G KPKPQG + + D VL E Sbjct: 223 DSDDEVAVPKPS----DIIKRLEGNTVGNAGFKPKPQGRPVYTGDEVLKRPE 270 >SB_19735| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.091) Length = 163 Score = 28.3 bits (60), Expect = 6.1 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +3 Query: 351 ALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQ 491 A+ ST G +D G I+P+ D D+ G + A+KP Q Sbjct: 20 AVISTYSGFIDDGKSRFYIQPHDDKQDYYPYQGTGAHKVYAVKPLDQ 66 >SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7) Length = 856 Score = 28.3 bits (60), Expect = 6.1 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = +3 Query: 99 YIQLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATSENP----LLHQYTR 239 YI++ Y+P + +PD P H + S+ TSE P L+HQ R Sbjct: 708 YIEIPGYYQPCTSKTSAYPDIQIPGHFQPSSSK--TSEYPGTINLVHQRHR 756 >SB_33139| Best HMM Match : EGF_2 (HMM E-Value=6.1) Length = 337 Score = 27.9 bits (59), Expect = 8.0 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +3 Query: 489 QGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELE--THCRSVQEAQR 662 +G+ ++ A W L++ + F ++V T H PL K+F R L+ T+ R + QR Sbjct: 151 EGEALAVA-WGLEQTQY---FTQGCDNLVVVTDHKPLVKIFGDRTLDEITNSRLFRLKQR 206 Query: 663 ALSLR 677 L R Sbjct: 207 TLPWR 211 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,408,584 Number of Sequences: 59808 Number of extensions: 470110 Number of successful extensions: 1157 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1081 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1153 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1757375282 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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