Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30871
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)        107   6e-24
SB_13032| Best HMM Match : Aminotran_1_2 (HMM E-Value=3e-06)           53   2e-07
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       29   4.6  
SB_21095| Best HMM Match : RnaseH (HMM E-Value=4.7)                    29   4.6  
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)               29   4.6  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   4.6  
SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30)                   28   6.1  
SB_41081| Best HMM Match : DUF1014 (HMM E-Value=2.9)                   28   6.1  
SB_19735| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.091)         28   6.1  
SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)                   28   6.1  
SB_33139| Best HMM Match : EGF_2 (HMM E-Value=6.1)                     28   8.0  

>SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)
          Length = 398

 Score =  107 bits (258), Expect = 6e-24
 Identities = 67/162 (41%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
 Frame = +3

Query: 147 GFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEI 326
           GFPD     H+  AL + A+S+N  L QYTR  G PRLV  L+                 
Sbjct: 101 GFPDIAPESHIKAALIEAASSDNVALCQYTRSEGHPRLVNALA----------------- 143

Query: 327 LVTSGAYEALYSTILGH-VDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGDDI 503
                   A+Y+ + G  ++   EVI+IEP+FDCY   V  AGG P +I L+PK      
Sbjct: 144 --------AMYTKLQGREINALTEVILIEPFFDCYAPQVTSAGGKPVYIPLRPKEGAT-- 193

Query: 504 SSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELE 629
           SS D++LD  EL S F+++TK +++NTP+NPLGKVF++ ELE
Sbjct: 194 SSKDFLLDPEELESKFSSKTKAMVINTPNNPLGKVFSRSELE 235



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/17 (58%), Positives = 16/17 (94%)
 Frame = +1

Query: 628 KLIADLCKKHNVLCLSD 678
           ++IA+LC +HN+LC+SD
Sbjct: 235 EMIANLCIRHNILCISD 251


>SB_13032| Best HMM Match : Aminotran_1_2 (HMM E-Value=3e-06)
          Length = 277

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 44/165 (26%), Positives = 77/165 (46%)
 Frame = +3

Query: 132 VNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQID 311
           +N+GQ  PD   P+   +A+     + N  + +Y+   G     E LS  Y       ID
Sbjct: 36  LNIGQ--PDIKTPQVALDAVK----NANIEVLEYSHSAGFDSYREKLSGYYKNQ-NLPID 88

Query: 312 AFNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQ 491
              +I++T+G  EAL   +   +D+ DEVII EP++  Y+     +G       +K  P 
Sbjct: 89  K-QDIIITTGGSEALLFALGSVMDSDDEVIIPEPFYANYNGFAVASG-------VKVVPV 140

Query: 492 GDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQREL 626
              I +   +    +   L  ++TK I++  P NP G ++++ E+
Sbjct: 141 ISSIETGFALPPIEDFEKLITSKTKAILICNPGNPTGYLYSEEEI 185


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 348  HRHHS*LGFH*RHLSVVQSAGSKP 277
            H HH+   +H RH  ++   G+KP
Sbjct: 1053 HHHHTHYNYHYRHFLIIDRPGNKP 1076


>SB_21095| Best HMM Match : RnaseH (HMM E-Value=4.7)
          Length = 289

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 489 QGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELE--THCRSVQEAQR 662
           +G+ ++ A W LD+      F      ++V T H PL K+F  R L+  T+ R  +  QR
Sbjct: 103 EGEALAVA-WGLDQTRY---FTQGCDNLVVVTDHKPLVKIFGDRTLDEITNSRLFRLKQR 158

Query: 663 ALSLR 677
            L  R
Sbjct: 159 TLPRR 163


>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
          Length = 1037

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 243 FGLPRLVENLSKVYSPLIGRQIDAFNEILVTSG 341
           F  P L+  L+K+   + G+Q++   +IL TSG
Sbjct: 156 FAAPNLLAQLAKLLDFIHGKQVEELEDILSTSG 188


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 671  RQSTLCFLHRSAMSFQLALGEHLAQRIVGRVHDDHFSSVV 552
            R +    L+    SF   L  HL ++  G VH+DH S VV
Sbjct: 2446 RYAVTLMLNPDEPSFVEGLRNHLWKQFPGMVHEDHGSQVV 2485


>SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 351 ALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQ 491
           A+ ST  G +D G     I+P+ D  D+      G  +  A+KP  Q
Sbjct: 78  AVISTYSGFIDDGKSRFYIQPHDDKQDYYPYQGTGAHKVYAVKPLDQ 124


>SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30)
          Length = 426

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 336 SGAYEALYSTILGHVDTGDEVIIIEPYFDCY 428
           SG ++ L   ++G + TG+ +++I  Y+ C+
Sbjct: 263 SGPWQDLAIDLMGPMPTGENLLVIVDYYSCF 293


>SB_41081| Best HMM Match : DUF1014 (HMM E-Value=2.9)
          Length = 340

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 381 DTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGDDISSADWVLDEAE 536
           D+ DEV + +P     D + +  G        KPKPQG  + + D VL   E
Sbjct: 223 DSDDEVAVPKPS----DIIKRLEGNTVGNAGFKPKPQGRPVYTGDEVLKRPE 270


>SB_19735| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.091)
          Length = 163

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 351 ALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQ 491
           A+ ST  G +D G     I+P+ D  D+      G  +  A+KP  Q
Sbjct: 20  AVISTYSGFIDDGKSRFYIQPHDDKQDYYPYQGTGAHKVYAVKPLDQ 66


>SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)
          Length = 856

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 99  YIQLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATSENP----LLHQYTR 239
           YI++   Y+P  +    +PD   P H   + S+  TSE P    L+HQ  R
Sbjct: 708 YIEIPGYYQPCTSKTSAYPDIQIPGHFQPSSSK--TSEYPGTINLVHQRHR 756


>SB_33139| Best HMM Match : EGF_2 (HMM E-Value=6.1)
          Length = 337

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 489 QGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRELE--THCRSVQEAQR 662
           +G+ ++ A W L++ +    F      ++V T H PL K+F  R L+  T+ R  +  QR
Sbjct: 151 EGEALAVA-WGLEQTQY---FTQGCDNLVVVTDHKPLVKIFGDRTLDEITNSRLFRLKQR 206

Query: 663 ALSLR 677
            L  R
Sbjct: 207 TLPWR 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,408,584
Number of Sequences: 59808
Number of extensions: 470110
Number of successful extensions: 1157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)