Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30869
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9515| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.063
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      34   0.11 
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)                    30   1.8  
SB_31117| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             28   5.4  

>SB_9515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 420 LVGNFILFILCHGARASYNFTLVNFS**RSITSKTFSYKILYEGGFL 560
           ++     F++C     +  FT   FS   S+   TF+Y ILY  GFL
Sbjct: 22  IIATLAAFVICWSPSTAEQFTAAVFSPEVSLCLSTFAYTILYSNGFL 68


>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 372 LYSDSPSYVGRVVMSDLVGNFILFILCHGARASYNFTLVNFS 497
           +YS  PSY+  +V+  L  ++IL I+ +G   SY  T+V +S
Sbjct: 195 VYSLKPSYILTIVVYGLTPSYILTIIVYGLTPSYILTIVVYS 236



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 372 LYSDSPSYVGRVVMSDLVGNFILFILCHGARASYNFTLV 488
           +YS  PSY+  +V+  L  ++IL I+ +G   SY  T++
Sbjct: 234 VYSLKPSYILTIVVYGLTPSYILTIVVYGLTPSYILTII 272



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 372 LYSDSPSYVGRVVMSDLVGNFILFILCHGARASY 473
           +YS  PSY+  +V+  L  ++IL I+ +G   SY
Sbjct: 286 VYSLKPSYILTIVVYGLTPSYILTIVVYGLTPSY 319


>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
          Length = 905

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 544 YKILYENVFEVILLYYEKLT-RVKLYDARAP*HKMNRMKLPTK 419
           YK+++   F   +++Y+    +V  YD+ A  HK N++K  TK
Sbjct: 813 YKLVFYGFFAYKVVFYDSYAYKVVFYDSYAYEHKYNKLKKRTK 855


>SB_31117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 466 HRIISLSSIFHNKEV*LQKHFRIKFYM 546
           HR+  LSS FH  E+  QK F +  +M
Sbjct: 23  HRLYILSSFFHKGELQRQKEFEVAMFM 49


>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 350

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +3

Query: 384 SPSYVGRVVMSDLVGNFIL---FILCHGARASYNFTLVNFS 497
           S S++G + +  LVGNF++   F +C   R+  N+ LV+ S
Sbjct: 31  STSFIGILSVLTLVGNFMVLATFCMCKELRSITNYFLVSLS 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,936
Number of Sequences: 59808
Number of extensions: 249049
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)