Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30868
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 44 2e-05
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 33 0.040
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 2.6
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 27 3.5
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 4.6
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 4.6
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 26 6.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.1
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.1
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 309 LKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP 425
LK+L HG+ Q+G VF K+GS +K ++KYA+L F + P
Sbjct: 5 LKVLCLHGWIQSGPVFSKKMGSVQKYLSKYAELHFPTGP 43
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 33.1 bits (72), Expect = 0.040
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 306 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP 425
K KIL HGY ++G +F K+ + R+ +A F + P
Sbjct: 6 KSKILCIHGYAESGELFSVKLRALRERMADSVDFYFPTGP 45
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 27.1 bits (57), Expect = 2.6
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Frame = -3
Query: 637 PISP--PNMLPCEKPIN--------PWKGPCS--STTNSINLKVSSKPTAGPPKHLPLNV 494
P+SP PN L KPI+ P + P S S S++ P +PL+
Sbjct: 189 PVSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMHSLQESLHSVEPESPIFQQAPQIPLSN 248
Query: 493 LSSE--LNHHERESSLPLPSFKTL*GAEIKVSCAYLATAFRN 374
S + +NH +SLP SF + +VS + A +N
Sbjct: 249 ASQQSYINHSSDGASLPQSSFLNFNSSGKRVSVSAAAQQHKN 290
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -3
Query: 595 NPWKGPCSSTTNSINLKVSSKPT--AGPPKHLPLNVLSSELNHHERESSLPLPSFKTL 428
NPWK CS T + V + T + P LN L + + ++ + LP TL
Sbjct: 237 NPWKRACSQTDGTYRSYVHNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTL 294
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -3
Query: 625 PNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHERESSLPL 446
P LP +K P K S ++ + SS HL ++ S+ELN SS+ L
Sbjct: 434 PLALPNKKAFQPVKFRVPSFSSPLVKPASSSSFGRSHSHLGTSLRSNELNGSSASSSIFL 493
Query: 445 PS 440
S
Sbjct: 494 QS 495
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -3
Query: 679 NRRHTLNILFVAWPPISPPNMLPCEKPINPWKGPCSSTTNS--INLKVSSKPTAGPPKHL 506
N +H++N+ + P PP + I P S+ TNS + + PP HL
Sbjct: 554 NTQHSINLHTIVPSPYEPPLSVTPSTAITNLSIPESNRTNSSASSKSFTMNDLILPPLHL 613
Query: 505 PLNVLSSELNHHERESS 455
N + H + +SS
Sbjct: 614 K-NTTQTNNAHEDAQSS 629
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 538 SKPTAGPPKHLPLNVLSSELNHHERE--SSLPLP 443
S TAG P+ +N LSSE+++ + + S + LP
Sbjct: 50 SSHTAGNPRSKLINALSSEIDYEKNQVLSEISLP 83
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 640 PPISPPNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPP 515
PPI PP+ P N P + + + + +SKP PP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 508 LPLNVLSSELNHHERESSLPLPSF 437
+ +N LSS LN+H + S+ PSF
Sbjct: 702 IDINTLSSMLNYHTQAVSIHHPSF 725
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,591
Number of Sequences: 5004
Number of extensions: 58972
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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