BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30868 (708 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 44 2e-05 SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 33 0.040 SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 2.6 SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 27 3.5 SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 4.6 SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 4.6 SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 26 6.1 SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.1 SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.1 >SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharomyces pombe|chr 3|||Manual Length = 461 Score = 44.4 bits (100), Expect = 2e-05 Identities = 19/39 (48%), Positives = 28/39 (71%) Frame = +3 Query: 309 LKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP 425 LK+L HG+ Q+G VF K+GS +K ++KYA+L F + P Sbjct: 5 LKVLCLHGWIQSGPVFSKKMGSVQKYLSKYAELHFPTGP 43 >SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr 1|||Manual Length = 429 Score = 33.1 bits (72), Expect = 0.040 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +3 Query: 306 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAP 425 K KIL HGY ++G +F K+ + R+ +A F + P Sbjct: 6 KSKILCIHGYAESGELFSVKLRALRERMADSVDFYFPTGP 45 >SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2|||Manual Length = 1157 Score = 27.1 bits (57), Expect = 2.6 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 14/102 (13%) Frame = -3 Query: 637 PISP--PNMLPCEKPIN--------PWKGPCS--STTNSINLKVSSKPTAGPPKHLPLNV 494 P+SP PN L KPI+ P + P S S S++ P +PL+ Sbjct: 189 PVSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMHSLQESLHSVEPESPIFQQAPQIPLSN 248 Query: 493 LSSE--LNHHERESSLPLPSFKTL*GAEIKVSCAYLATAFRN 374 S + +NH +SLP SF + +VS + A +N Sbjct: 249 ASQQSYINHSSDGASLPQSSFLNFNSSGKRVSVSAAAQQHKN 290 >SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schizosaccharomyces pombe|chr 2|||Manual Length = 470 Score = 26.6 bits (56), Expect = 3.5 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = -3 Query: 595 NPWKGPCSSTTNSINLKVSSKPT--AGPPKHLPLNVLSSELNHHERESSLPLPSFKTL 428 NPWK CS T + V + T + P LN L + + ++ + LP TL Sbjct: 237 NPWKRACSQTDGTYRSYVHNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTL 294 >SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 715 Score = 26.2 bits (55), Expect = 4.6 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = -3 Query: 625 PNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHERESSLPL 446 P LP +K P K S ++ + SS HL ++ S+ELN SS+ L Sbjct: 434 PLALPNKKAFQPVKFRVPSFSSPLVKPASSSSFGRSHSHLGTSLRSNELNGSSASSSIFL 493 Query: 445 PS 440 S Sbjct: 494 QS 495 >SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe|chr 1|||Manual Length = 727 Score = 26.2 bits (55), Expect = 4.6 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Frame = -3 Query: 679 NRRHTLNILFVAWPPISPPNMLPCEKPINPWKGPCSSTTNS--INLKVSSKPTAGPPKHL 506 N +H++N+ + P PP + I P S+ TNS + + PP HL Sbjct: 554 NTQHSINLHTIVPSPYEPPLSVTPSTAITNLSIPESNRTNSSASSKSFTMNDLILPPLHL 613 Query: 505 PLNVLSSELNHHERESS 455 N + H + +SS Sbjct: 614 K-NTTQTNNAHEDAQSS 629 >SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 269 Score = 25.8 bits (54), Expect = 6.1 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = -3 Query: 538 SKPTAGPPKHLPLNVLSSELNHHERE--SSLPLP 443 S TAG P+ +N LSSE+++ + + S + LP Sbjct: 50 SSHTAGNPRSKLINALSSEIDYEKNQVLSEISLP 83 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 25.8 bits (54), Expect = 6.1 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = -3 Query: 640 PPISPPNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPP 515 PPI PP+ P N P + + + + +SKP PP Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295 >SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 815 Score = 25.8 bits (54), Expect = 6.1 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 508 LPLNVLSSELNHHERESSLPLPSF 437 + +N LSS LN+H + S+ PSF Sbjct: 702 IDINTLSSMLNYHTQAVSIHHPSF 725 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,844,591 Number of Sequences: 5004 Number of extensions: 58972 Number of successful extensions: 152 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 152 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 329179816 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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