Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30868
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 46 4e-05
03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131 34 0.13
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 30 2.1
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313... 29 2.7
01_01_0379 - 2956396-2957409 29 2.7
12_02_0674 - 21745321-21746223,21746229-21747608 29 3.6
06_01_0963 + 7411944-7412396,7412677-7412736,7412828-7413010,741... 29 3.6
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 28 6.3
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 6.3
06_03_0382 - 20142830-20144329 28 8.4
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +3
Query: 306 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAPHKV 434
KLKIL HG+RQN + F+ + + K + A L FI APH++
Sbjct: 451 KLKILCLHGFRQNASNFKGRTSALAKKLKHIADLVFIDAPHEL 493
>03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131
Length = 391
Score = 33.9 bits (74), Expect = 0.13
Identities = 25/98 (25%), Positives = 39/98 (39%)
Frame = -3
Query: 631 SPPNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHERESSL 452
S P P +P++ S++ S+++ SS A PP PL + L H RE +
Sbjct: 9 SSPVFSPSRRPLSCKAASASASPESVSVAASSPAQAAPPAGSPLRPFA--LRAHLREEAT 66
Query: 451 PLPSFKTL*GAEIKVSCAYLATAFRNDPILALNTVPFC 338
P P A + + R P++ VP C
Sbjct: 67 PSPQPSAAAAAAVSAPAGSVLKRRRPAPLV----VPVC 100
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 640 PPISPPNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLP 503
PP PP P P++P S TTNS ++ S PP +P
Sbjct: 82 PPPPPPPPPPPPPPLSPTPTTTSWTTNSSSISASPILPPPPPPPMP 127
>03_01_0403 -
3133568-3134440,3135131-3135494,3136341-3136408,
3137184-3137857,3138093-3138105
Length = 663
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 664 LNILFVAWPPISPPNMLPCEKPINPW 587
+NIL AWPP+S P ++P +K W
Sbjct: 381 VNIL-AAWPPMSSPTVIPLDKRSVTW 405
>01_01_0379 - 2956396-2957409
Length = 337
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 628 PPNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNV 494
PP P + P WK T+ + L+V PTAG + LP+ V
Sbjct: 41 PPEDFP-DVPGVQWKDLVYDATHGLKLRVYRPPTAGDAERLPVLV 84
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -3
Query: 610 CEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHERESSLPLPSFK 434
C P++ G SST ++ L S+ T+ P PL+ + ++ R L P+ K
Sbjct: 577 CTSPLSTATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDK 635
>06_01_0963 +
7411944-7412396,7412677-7412736,7412828-7413010,
7413259-7413339,7414219-7414541,7414961-7415084
Length = 407
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 569 GGAWTFPWIYGFLTGEHVWWAYWRP 643
G W PW+ F TG V + W P
Sbjct: 235 GAGWETPWVTDFTTGMGVGFLNWHP 259
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 306 KLKILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFISAPHKVLNDGSGSE 458
K K+L HG+R +G+ + +I + ++ + + F P + G SE
Sbjct: 174 KFKVLCLHGFRTSGSFLKKQISKWNPSIFQQFDMVF---PDGIFPAGGKSE 221
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 333 YRQNGTVFRAKIGSFRKAV-AKYAQLTFISAPHKVLNDGSGSEDSRSWWFNSEDNTFSGK 509
Y GT+ +AKI K++ K Q F + + + + ++SW + +
Sbjct: 742 YGLTGTIDKAKIAEIAKSIPGKRGQQKFSQEEVQQMINHALQGLNQSW--EEKFKSLEQS 799
Query: 510 CLGGPAVGFEETLRLIELVVEEHGP 584
G P +G + + I+LV +H P
Sbjct: 800 VRGAPLLGVDHETQEIDLVTLQHAP 824
>06_03_0382 - 20142830-20144329
Length = 499
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 574 SSTTNSINLKVSSKPTAGPPKHLPLNVLS---SELNHHERESSLPLP 443
+ T S + S P AG P+ + +V + SEL+ E +SLPLP
Sbjct: 300 TDTIESSSSSESPTPVAGTPRGMHTSVSAPALSELDRMEDSASLPLP 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,347,026
Number of Sequences: 37544
Number of extensions: 392252
Number of successful extensions: 1136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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