Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30868
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47559| Best HMM Match : Antimicrobial_9 (HMM E-Value=3.6) 30 2.1
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_113| Best HMM Match : HALZ (HMM E-Value=0.32) 29 2.8
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 29 3.7
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06) 29 4.9
SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 28 8.5
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 28 8.5
>SB_47559| Best HMM Match : Antimicrobial_9 (HMM E-Value=3.6)
Length = 254
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 312 KILAFHGYRQNGTVFRAKIGSFRKAVAKYAQLTFIS 419
KI G R N T+F K+G+F K + + L+ +S
Sbjct: 204 KICEKEGNRMNETLFEVKVGTFLKCATECSSLSLLS 239
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/63 (20%), Positives = 26/63 (41%)
Frame = -3
Query: 646 AWPPISPPNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHE 467
A+P +P P + P NP P ++ + ++ P P P+N ++ +
Sbjct: 1303 AYPSAAPATAYPTQAPANPTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPTAAPATAYP 1362
Query: 466 RES 458
+S
Sbjct: 1363 AQS 1365
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/48 (22%), Positives = 19/48 (39%)
Frame = -3
Query: 640 PPISPPNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLN 497
P +P P + P+NP P ++ + ++ P P P N
Sbjct: 1321 PTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPTAAPATAYPAQSPFN 1368
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -3
Query: 640 PPISPPNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHERE 461
PP +P +PC P+ P P S+ +L + +A PP P+ S N +
Sbjct: 772 PPCAPIPPMPCSAPLPPAPAPFSAAP---HLPPAPNISAEPPPPPPVARKPSRSNSTSSQ 828
Query: 460 SSLPLPS 440
SL L S
Sbjct: 829 RSLELQS 835
>SB_113| Best HMM Match : HALZ (HMM E-Value=0.32)
Length = 255
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 588 GKVHAPPPPTQLISKFLQNPQPDLLSTCR*MCCLLN*TTMSANLHFHC--HHSRLY 427
G VH P PPT +I+KF++ D + R L + TT HF+C H + +Y
Sbjct: 129 GNVHPPSPPT-IIAKFVRRDIKDEIYKAR--FSLKDKTTQDLE-HFNCTDHRNHIY 180
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 625 PNMLPCEKP-INPWKGPCSSTTNSINLKVSSKPTAGPP 515
P + P E P + P P S+ TNS S+ PT P
Sbjct: 70 PTLAPTEGPTLGPTVAPTSNVTNSTEAPTSAVPTTASP 107
>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
Length = 757
Score = 28.7 bits (61), Expect = 4.9
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = -3
Query: 694 TEILQNRRHTLNILFVAWPPISPPNMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPP 515
T++ +RRH + + PP +P P P P T + + V+ TA P
Sbjct: 309 TDVRTHRRHRVGLKEQNLPPATPQEADPGPTPDKKQDNP---ATKAPEVAVAVTATARPK 365
Query: 514 KHLPLNVLSSELNHHERESSLPLPSFKT-L*GAEIKVSCAYLATAFR 377
++ + H +SL L S + L I++S + L+TA +
Sbjct: 366 SERTKSISHQGTSEHPIMASLALSSRASHLLCRSIRLSSSRLSTAIK 412
>SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 583 GPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSS---ELNHHERESSLPLPSFKTL*GAEI 413
G +STT +I + T+ + + + L + EL+ E + LP ++ +
Sbjct: 412 GSYTSTTGNITTAEEFRKTSTGTQFVIVTKLGASIRELSAFPEEEEVLLPPYEAFRVHRV 471
Query: 412 KVSCAYLATAFRND 371
+ C Y+A+ F ND
Sbjct: 472 EPGCIYVASVFEND 485
>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
Length = 711
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 622 NMLPCEKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLPLNVLSSELNHHERESSLPLP 443
+++ C P++P S+ LK +KP + L+ + S ++ +S+LP P
Sbjct: 3 SVVSCTPPVSPHSPAKKKAKFSLRLKGKNKPKSSDDSPKKLHPIFSPVSESPDKSTLPQP 62
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 607 EKPINPWKGPCSSTTNSINLKVSSKPTAGPPKHLP 503
EKP++P K +T + + SS+P +G P+ P
Sbjct: 521 EKPVSP-KSQSRPSTPKVGSRPSSRPPSGSPRQSP 554
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,084,479
Number of Sequences: 59808
Number of extensions: 430018
Number of successful extensions: 1401
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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