Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30867
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      29   3.7  
SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 51  IATTYNLVFFVSVSD-KCLSIILSCNYSLDLIIIIKTYKFTVSCIM 185
           I  T+ L+  +S++  K L++I++  + L +IIII T+K     I+
Sbjct: 296 IINTHKLLIVISINTHKLLTVIINNTHKLLIIIIINTHKLLTVIII 341


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 21  IC-SLPRSYSYIATTYNLVFFVSVSDKCLSIILSCNYSLDLIIIIKTYKFTVSCIMFLCS 197
           IC S+ RSY  I    +++    +   CLS++ S  +    + ++++YKF   C+  L S
Sbjct: 741 ICLSMLRSYEIIGICLSMLRSYEIIGICLSMLRSYKFIGICLSMLRSYKFIGICLSMLRS 800



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 21  IC-SLPRSYSYIATTYNLVFFVSVSDKCLSIILSCNYSLDLIIIIKTYKFTVSCIMFLCS 197
           IC S+ RSY  I    +++    +   CLS++ S  +    + ++++YKF   C+  L S
Sbjct: 806 ICLSMLRSYEIIGICLSMLRSYEIIGICLSMLRSYKFIGICLSMLRSYKFIGICLSMLRS 865


>SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 323 IIKIEALPNIWTKLYL*TFTAFVYVNIC 240
           I+ I  + N+WT L + T  AF  V++C
Sbjct: 405 IVTIVVIANLWTALMVFTCVAFTLVDLC 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,671,104
Number of Sequences: 59808
Number of extensions: 316374
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)