Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30867
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical
           protein C30G12.4 protein.
          Length = 258

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 24  CSLPRSYSYIATTYNLVFFVSVSDKCLSIILSC 122
           CSL  SYSY+  +  L+ +       +SI+LSC
Sbjct: 101 CSLTFSYSYMMVSCKLLLYYGTFSSIISIVLSC 133


>Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical
           protein C38C6.4 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 36  RSYSYIATTYNLVFFVSVSDKCLSIILSCNYSLDLIIIIKTYKFTVS 176
           ++YS I  +YN   FV      L  I+   Y L++ I IKT +F+ +
Sbjct: 21  KTYSIIEGSYNYYLFVFYIQIALIFIVLFYYLLNVYIDIKTCQFSTN 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,783
Number of Sequences: 27780
Number of extensions: 265930
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)