Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30867
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.8  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.7  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 585 TSLLIVNANKNLYNVFNLLSGTLV*HYTLIIGVVY 689
           T ++++N  +NLY  F+   G L  +    IG  Y
Sbjct: 508 TPMMVINMLQNLYEQFDSFCGQLDVYKVETIGDAY 542


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/30 (20%), Positives = 18/30 (60%)
 Frame = +1

Query: 262 AVKVYKYSLVQIFGSASILIIICYAAFRHT 351
           A+ ++ +S+  +FG+  +++ +    + HT
Sbjct: 49  AILLFLFSVATVFGNTLVILAVVRERYLHT 78


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 335 LHLDILFNDLFKC 373
           LH D L N+ FKC
Sbjct: 38  LHSDRLLNNYFKC 50


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 5/19 (26%), Positives = 14/19 (73%)
 Frame = +1

Query: 286 LVQIFGSASILIIICYAAF 342
           L+Q++G   +L+++ + +F
Sbjct: 217 LIQVYGPCVLLVVLSWVSF 235


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 335 LHLDILFNDLFKC 373
           LH D L N+ FKC
Sbjct: 38  LHSDRLLNNYFKC 50


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 335 LHLDILFNDLFKC 373
           LH D L N+ FKC
Sbjct: 38  LHSDRLLNNYFKC 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,550
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)