BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30862 (657 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.) 193 1e-49 SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06) 29 2.5 SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018) 28 7.7 SB_32398| Best HMM Match : PspC (HMM E-Value=1.4) 28 7.7 SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 28 7.7 SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002) 28 7.7 >SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 329 Score = 193 bits (470), Expect = 1e-49 Identities = 87/147 (59%), Positives = 113/147 (76%) Frame = +3 Query: 207 KRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLG 386 K+GTGGRSSFNG+ ATVFG TGF+GRYV N+LG++GTQL +PYRGD +D + L++ GDLG Sbjct: 9 KKGTGGRSSFNGVSATVFGATGFLGRYVINRLGRVGTQLTVPYRGDEHDIRHLRLMGDLG 68 Query: 387 QVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGV 566 Q+ F +HL DEESIAK V++SNVV+NL+GR +ET+NF + +VHVDG R IA+ +E GV Sbjct: 69 QIDFFDFHLKDEESIAKMVKHSNVVVNLIGRGFETRNFNFEEVHVDGARTIAKAAKEAGV 128 Query: 567 ERFIHLSYLNAEEHPKPLVLKNRLLGK 647 ER IH+S LNA L + LG+ Sbjct: 129 ERLIHVSALNAAVDSPSKFLHTKALGE 155 >SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06) Length = 441 Score = 29.5 bits (63), Expect = 2.5 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 255 VFGCTGFVGRYVCNKLGKIGTQLILPYRGDFY 350 VFG GF+G V ++L K G + + RG++Y Sbjct: 30 VFGGNGFIGSEVVSRLIKQGDDITIVNRGNWY 61 >SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018) Length = 349 Score = 27.9 bits (59), Expect = 7.7 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 320 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLIC 201 LGT+ S F+ IA K GAT A AA + ++C Sbjct: 2 LGTSISYFIVQIADWKFGATRFGPQPAYIGKAALAMMIVC 41 >SB_32398| Best HMM Match : PspC (HMM E-Value=1.4) Length = 203 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -2 Query: 269 GATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTHRP 135 G ++ D V+ ++I C FT+ V GFD++ T P Sbjct: 59 GTRKHTPLDLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 103 >SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) Length = 612 Score = 27.9 bits (59), Expect = 7.7 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +3 Query: 168 NYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYV 290 NY+S R+ L + GGR ++G+VATV F G Y+ Sbjct: 463 NYTSMRQA-LVSIWTNEGGRGLYSGLVATVARDAPFSGLYL 502 >SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002) Length = 512 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -2 Query: 269 GATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTHRP 135 G ++ D V+ ++I C FT+ V GFD++ T P Sbjct: 293 GTRKHTPLDLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 337 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,540,348 Number of Sequences: 59808 Number of extensions: 393021 Number of successful extensions: 1292 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1220 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1292 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1681430875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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