Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30861
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0321 + 24091997-24092530                                         30   1.0  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   1.8  
04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820     29   2.4  

>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +3

Query: 24  RVRPKESNSF*LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPS 203
           + RP  S+     + A    S RQ  ++  A +R  RRL+ +   +  S  GS   +  +
Sbjct: 81  QARPSSSSE---QEEAAEAASRRQQQQQAAAAAR-ERRLRRRRSDSRGSCGGSGDGVLLN 136

Query: 204 TWVPGKVLRPRSMPRP 251
            +VPG + R  + PRP
Sbjct: 137 FYVPGLLTRSMTTPRP 152


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 164 VCTFQLHLEPPPWPALGVSLFASL 93
           V  FQ  + PPPWPA G + F  +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254


>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
          Length = 110

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/108 (22%), Positives = 40/108 (37%)
 Frame = +2

Query: 17  DMASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXX 196
           D   +  GIQQLLAAE+ A + V+                   E+               
Sbjct: 2   DANRRQSGIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRKV 61

Query: 197 AKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIK 340
           A+  G       +++ ET  KI ++ +   +    VI+ +L  V  +K
Sbjct: 62  AESSGDSGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVK 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,450
Number of Sequences: 37544
Number of extensions: 208895
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)