BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30861 (533 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_05_0321 + 24091997-24092530 30 1.0 12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 29 1.8 04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820 29 2.4 >05_05_0321 + 24091997-24092530 Length = 177 Score = 30.3 bits (65), Expect = 1.0 Identities = 22/76 (28%), Positives = 36/76 (47%) Frame = +3 Query: 24 RVRPKESNSF*LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPS 203 + RP S+ + A S RQ ++ A +R RRL+ + + S GS + + Sbjct: 81 QARPSSSSE---QEEAAEAASRRQQQQQAAAAAR-ERRLRRRRSDSRGSCGGSGDGVLLN 136 Query: 204 TWVPGKVLRPRSMPRP 251 +VPG + R + PRP Sbjct: 137 FYVPGLLTRSMTTPRP 152 >12_02_1069 + 25801309-25801433,25802429-25802620,25803130-25803159, 25803426-25803500,25803599-25804373,25804549-25804614, 25804746-25804811,25804898-25805140,25805407-25805502 Length = 555 Score = 29.5 bits (63), Expect = 1.8 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 164 VCTFQLHLEPPPWPALGVSLFASL 93 V FQ + PPPWPA G + F + Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254 >04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820 Length = 110 Score = 29.1 bits (62), Expect = 2.4 Identities = 24/108 (22%), Positives = 40/108 (37%) Frame = +2 Query: 17 DMASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXX 196 D + GIQQLLAAE+ A + V+ E+ Sbjct: 2 DANRRQSGIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRKV 61 Query: 197 AKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIK 340 A+ G +++ ET KI ++ + + VI+ +L V +K Sbjct: 62 AESSGDSGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVK 109 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,807,450 Number of Sequences: 37544 Number of extensions: 208895 Number of successful extensions: 550 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 550 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1190246000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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