Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30860
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    28   1.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.9  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   5.9  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   5.9  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = -2

Query: 225 INKKNNKSTFLLFQNSAIICK*KLNTFSFSKKHGMLRKDYFFERERERILNSVPNIYLRV 46
           ++ KN+     +  N A++ K +LN  +F     +  ++Y+  R ++ ++N  P++   +
Sbjct: 343 LSLKNSSVLKKILNNLALMKKKELN-LNFLPSFDVWDREYYTARYKQSLINQKPSLNPSI 401

Query: 45  FSKARFF 25
            +  RFF
Sbjct: 402 TNYRRFF 408


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 600 PFYKITFFFSVNTFFNYIIRLIVYNF 523
           PF+   F+FS+ +FF+++   + +NF
Sbjct: 106 PFFCFFFYFSLFSFFSFLFTSLHFNF 131


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 695 YRKKIVNFTINFEFNNTKKIYHVRSRAIS*CRHFIKLLFFF 573
           + K  VN+ + FEFN  K +   +   I     FI  LFFF
Sbjct: 326 WEKTRVNYMLIFEFNQRKSLNWRQHLEIVGAVFFIFSLFFF 366


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 633 SRPFTRHILMPPFYKITFFFSVNTFFNY 550
           S PF+  IL P    + F +S+N+F +Y
Sbjct: 84  SHPFSPTILSPSSPNMDFTYSINSFGDY 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,695
Number of Sequences: 5004
Number of extensions: 44078
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)