BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30860 (697 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 28 1.1 SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9 SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 5.9 SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 5.9 >SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 762 Score = 28.3 bits (60), Expect = 1.1 Identities = 15/67 (22%), Positives = 35/67 (52%) Frame = -2 Query: 225 INKKNNKSTFLLFQNSAIICK*KLNTFSFSKKHGMLRKDYFFERERERILNSVPNIYLRV 46 ++ KN+ + N A++ K +LN +F + ++Y+ R ++ ++N P++ + Sbjct: 343 LSLKNSSVLKKILNNLALMKKKELN-LNFLPSFDVWDREYYTARYKQSLINQKPSLNPSI 401 Query: 45 FSKARFF 25 + RFF Sbjct: 402 TNYRRFF 408 >SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 27.5 bits (58), Expect = 1.9 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = -2 Query: 600 PFYKITFFFSVNTFFNYIIRLIVYNF 523 PF+ F+FS+ +FF+++ + +NF Sbjct: 106 PFFCFFFYFSLFSFFSFLFTSLHFNF 131 >SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 682 Score = 25.8 bits (54), Expect = 5.9 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 695 YRKKIVNFTINFEFNNTKKIYHVRSRAIS*CRHFIKLLFFF 573 + K VN+ + FEFN K + + I FI LFFF Sbjct: 326 WEKTRVNYMLIFEFNQRKSLNWRQHLEIVGAVFFIFSLFFF 366 >SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 697 Score = 25.8 bits (54), Expect = 5.9 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 633 SRPFTRHILMPPFYKITFFFSVNTFFNY 550 S PF+ IL P + F +S+N+F +Y Sbjct: 84 SHPFSPTILSPSSPNMDFTYSINSFGDY 111 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,418,695 Number of Sequences: 5004 Number of extensions: 44078 Number of successful extensions: 110 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 110 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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