Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30859
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 28 1.3
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.3
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.3
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 27 2.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.0
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 4.0
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 5.3
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 26 5.3
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 5.3
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 7.0
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 7.0
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.0
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 7.0
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 9.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 9.2
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 86 SFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDP 202
SF S +SLL E+FSA LG +++ WN LL P
Sbjct: 32 SFLWSESAKKSLLNEVFSALLGY---DHTLWNTLLPERP 67
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -3
Query: 207 LNGSVINNPFHSEFSSTE-RPREAENISFKRLSKVLLEPEKLNDSGLW---RMLSSPEAL 40
L G ++NPF S+F + E R EAE I ++ + ++ ++ +W RM++S +
Sbjct: 298 LLGDEVHNPF-SDFETVEDRAHEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSK 356
Query: 39 IPIIE 25
P +E
Sbjct: 357 APGLE 361
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 200 DQLSIIHSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYG 66
DQL++ + ++ E Q LK+SR Y+N+ +L T +G
Sbjct: 1126 DQLNLSVQRSALIKAAFPESQSNANLKNSRGIYYNEHDLVTDIFG 1170
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +2
Query: 119 LLKEIFSASLGLSVEE---NSEWNGLLITDPFNTPEAVVEVYISGISS-LGSSADFKSKK 286
LL+ A L ++E +++ L+ TD + ++ VY IS L S +
Sbjct: 425 LLQHPLFAPLSHAIESLYGSTDAEALVATDEQDILMILICVYCLSISEKLPFSISMLVEG 484
Query: 287 YPLVVDEYEPDTFDVLKHRINQRFTN 364
YP V + + F++L Q+FTN
Sbjct: 485 YPAVANPEGVEVFEILDEMFFQQFTN 510
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 440 LDIPKVKKQSLQHLK-SSVEEDF-QFLSELAA-LKAVTEKVE-SGAISADNIIDFYNLRI 607
L+I K KK K ++V D Q+ E + ++ EK++ + + +N +F+NL+
Sbjct: 546 LEIEKRKKYETNEAKITTVATDLSQYYRESKEYIASLYEKLDRTERNNKENENNFWNLKF 605
Query: 608 NSLHALRDFH 637
N L LR FH
Sbjct: 606 NLLTMLRSFH 615
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 77 ESLSFSGSSKTFESLLKEIFSASLGLSVEENSE 175
E L SGS K FE+ + F+ L + V +N E
Sbjct: 119 ELLKKSGSYKGFEAFVNRTFAVLLRIVVNDNEE 151
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 68 HSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGL 187
+ +S S +GS + E +F GL E EWNG+
Sbjct: 321 YQEDSASEAGSIED-EQATDNVFGFGKGLEQENEEEWNGI 359
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 50 GELSILHSPESLSFSGSSK-TFESLLKEIFSASLGLSVEENSE 175
G + + SP +++ SGS + E++ EIF + GLS + +E
Sbjct: 132 GMIVMGESPMNMAKSGSKNLSSENMATEIFEINSGLSAQSGTE 174
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 293 LVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLS 397
L +DE +P T RI R +NGG ++ +NLS
Sbjct: 330 LQIDENKPTT------RIQVRLSNGGRTVLTVNLS 358
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 5.3
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 299 VDEY-EPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQ 475
V E+ + ++FD ++ F N +N S + LLSY+ VLG ++ L
Sbjct: 364 VSEFVDENSFDSSSSCSSKVFLTTRNNSINSEDSAHEVLLSYNRVLGS----DIQGTILD 419
Query: 476 HLKSSVEEDFQFLSELAA 529
+K + D Q SEL +
Sbjct: 420 RVKKGYQFDSQKNSELVS 437
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.0
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Frame = +2
Query: 41 NASGELSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGL-LITDPFNTPE 217
++SG+ S L +LSFS S T E ++ + +S S N L L T P
Sbjct: 466 SSSGDFSALSCHRNLSFSESLPTAED---QVHNNHCAVSPSRRSSSNALYLATLPMGYER 522
Query: 218 AVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQ 352
+ Y S S D + P ++ FDVL + + Q
Sbjct: 523 SNSVSYCSDSSLSSPLPDDNMLQDPHALNMAYAKEFDVLINEVLQ 567
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 7.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 38 INASGELSILHSPESLSFSGSSKTFESLLKEIFSAS-LGLSVEENSEWNGLLITDPF 205
INA + I+ S S + GS +T +L KE ++ L L ++ W G L+T F
Sbjct: 337 INACLLVFIISSANSDIYIGS-RTLYALAKEGYAPKILMLQTKQGIPWVGCLVTSSF 392
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 59 SILHSPE-SLSFSGSSKTFESLLKEIFSASLGLSVEENSEW 178
S + SPE +L S S+ TF+SL KE+ L+ ++ E+
Sbjct: 93 SNVSSPEKTLLTSASTSTFDSLKKELLPELPSLAYSDDDEF 133
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +2
Query: 260 SSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNI 388
++ ++ KY L + TFD+L H + + +NGG+ ++ +
Sbjct: 139 TAQQYRQNKYQL---HFSRITFDLLLHFLFENVSNGGSIIIKL 178
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 194 TDPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGN 373
T F P V Y ++ + SSA+ + KK + PD + L+ ++++F G
Sbjct: 289 TKTFQVPPEVYAYYKERVA-IASSAEEEYKKMYASYKQSYPDLSNQLERILSRKFPEGWE 347
Query: 374 K 376
K
Sbjct: 348 K 348
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 579 LSALIAPDSTFSVTAFKAASSLRNWKSSSTE 487
+S LIA + + AF +S +R+WK S++
Sbjct: 946 VSVLIATSTGIFLGAFGDSSDIRDWKKISSQ 976
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,986
Number of Sequences: 5004
Number of extensions: 51418
Number of successful extensions: 217
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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