Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30857
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    27   2.6  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   7.9  

>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 103 LFKFETFSFLLPTQVHMFKHS*CLVIEIFVNYTF 2
           L+K     F L T +H+FK    + +  F++YT+
Sbjct: 375 LYKTHARRFSLSTTIHLFKKIVRITLSTFISYTW 408


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 441 LCYLWLMIYFTSLKYKI*ISN 379
           +CYLWL +Y     ++I  SN
Sbjct: 501 ICYLWLFLYCPFTPFQILFSN 521


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 202 KNVCFFNYNFTHVSSL 249
           +N C FNY+F+ +SSL
Sbjct: 422 ENPCLFNYSFSDLSSL 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,952
Number of Sequences: 5004
Number of extensions: 45554
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)