Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30857
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57109| Best HMM Match : DUF1280 (HMM E-Value=7.4)                   33   0.17 
SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)              33   0.17 
SB_51587| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-37)          28   6.2  
SB_51201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_57109| Best HMM Match : DUF1280 (HMM E-Value=7.4)
          Length = 605

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 25/101 (24%), Positives = 41/101 (40%)
 Frame = -2

Query: 339 RKIVLSGRLLCISDTFLTRENRRKSSYYIY*T*NVRKIVIKKTYVFMTLLRHKIKRRSDY 160
           R   L GR +C+       ++R  +S          K  +KK+  F  L + K+K+    
Sbjct: 62  RDRTLRGRNVCLEADIHFADSRFANSLSCNSVKTKPKFGVKKSRSFNYLRKRKLKQFDQE 121

Query: 159 FKSFFYS*QICLRSVLTIYCLNLKRFHFYYRHKYICLSTRN 37
             S F     C  +  T +  + +R  F  R + +C ST N
Sbjct: 122 LDSVFVEESNCQTATGTFHDFSSERTQFSRRQRDVCSSTNN 162


>SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
          Length = 870

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 25/101 (24%), Positives = 41/101 (40%)
 Frame = -2

Query: 339 RKIVLSGRLLCISDTFLTRENRRKSSYYIY*T*NVRKIVIKKTYVFMTLLRHKIKRRSDY 160
           R   L GR +C+       ++R  +S          K  +KK+  F  L + K+K+    
Sbjct: 62  RDRTLRGRNVCLEADIHFADSRFANSLSCNSVKTKPKFGVKKSRSFNYLRKRKLKQFDQE 121

Query: 159 FKSFFYS*QICLRSVLTIYCLNLKRFHFYYRHKYICLSTRN 37
             S F     C  +  T +  + +R  F  R + +C ST N
Sbjct: 122 LDSVFVEESNCQTATGTFHDFSSERTQFSRRQRDVCSSTNN 162


>SB_51587| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-37)
          Length = 404

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -3

Query: 263 LITFTKLETCVKL*LKKHTFL*RYYVIKLSAEVI-----ILKAFFIADKFACV 120
           ++ F  L+  +KL   +  F  R++V+K S ++      +L+   +AD+ ACV
Sbjct: 13  VLMFLALQQVIKLTAAEDRFQSRFFVVKESQKLYVGAQGVLRTVLVADRLACV 65


>SB_51201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 228 IVIKKTYVFMTLLRHKIKRRSDYFKSFFYS*QICLRSVLTIYCL-NLKRFHFYYRHKYIC 52
           I+I  T   + +  H+ ++     +S+ Y   I   + +T   L + K  HFY+RH+ I 
Sbjct: 5   IIINITTTTIIIFYHRHQKHQQQQQSYLYLKDIIRITNVTFSILPSPKNHHFYHRHQIIT 64

Query: 51  L 49
           +
Sbjct: 65  I 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,938,658
Number of Sequences: 59808
Number of extensions: 291657
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)