Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30857
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39160.1 68415.m04810 hypothetical protein                          29   2.2  
At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,...    28   5.1  

>At2g39160.1 68415.m04810 hypothetical protein
          Length = 120

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 486 LKVF*RTLNQFASDHLCYLWLM 421
           L+ F RTL+Q   +H CYLW++
Sbjct: 19  LRKFRRTLSQKYDNHYCYLWMV 40


>At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           SP:P48980 from [Lycopersicon esculentum]
          Length = 847

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 546 HFYDSSYYFMTFVKLINNGTLYMHL 620
           ++++ +Y  + FVKL+    LY+HL
Sbjct: 96  YYFEGNYDLVKFVKLVQQSGLYLHL 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,883,609
Number of Sequences: 28952
Number of extensions: 204402
Number of successful extensions: 282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)