Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30853
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8MSF5 Cluster: GM16138p; n=12; Arthropoda|Rep: GM16138...    90   4e-17
UniRef50_A3EXS3 Cluster: Putative ribonuclease; n=1; Maconellico...    83   6e-15
UniRef50_A7RHU7 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ...    54   3e-06
UniRef50_Q28WM7 Cluster: GA10879-PA; n=1; Drosophila pseudoobscu...    54   5e-06
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    50   4e-05
UniRef50_Q20589 Cluster: Putative uncharacterized protein; n=2; ...    48   2e-04
UniRef50_Q9NDV2 Cluster: Ribonuclease precursor; n=1; Ceratitis ...    47   4e-04
UniRef50_Q9W286 Cluster: CG11269-PA; n=1; Drosophila melanogaste...    43   0.006
UniRef50_O02142 Cluster: Putative uncharacterized protein; n=2; ...    41   0.026
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    33   6.8  

>UniRef50_Q8MSF5 Cluster: GM16138p; n=12; Arthropoda|Rep: GM16138p -
           Drosophila melanogaster (Fruit fly)
          Length = 95

 Score = 90.2 bits (214), Expect = 4e-17
 Identities = 39/74 (52%), Positives = 55/74 (74%)
 Frame = +2

Query: 2   IIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFXIEVEKGYTLNAQNCWIAALXYLI 181
           I+QL LMG+F+YI +VAL+EDLP +E+   HS+EDF     + Y  NA NCWIAA  Y++
Sbjct: 20  IVQLVLMGLFFYINSVALIEDLPLEEEY--HSLEDFYAAANRAYNQNAYNCWIAACIYVL 77

Query: 182 TLVVSGHQFWLNNR 223
           TL++S  QF++N+R
Sbjct: 78  TLLLSAQQFYMNSR 91


>UniRef50_A3EXS3 Cluster: Putative ribonuclease; n=1;
           Maconellicoccus hirsutus|Rep: Putative ribonuclease -
           Maconellicoccus hirsutus (hibiscus mealybug)
          Length = 72

 Score = 83.0 bits (196), Expect = 6e-15
 Identities = 41/73 (56%), Positives = 51/73 (69%)
 Frame = +2

Query: 20  MGVFYYIRAVALLEDLPFDEKNPPHSIEDFXIEVEKGYTLNAQNCWIAALXYLITLVVSG 199
           MG FY + ++AL EDLP  E+ P  S E F      GY  NA NCWIAA  Y+ITL+VSG
Sbjct: 1   MGFFYKVHSLALAEDLPGLEE-PFESHEKFYSVANTGYDQNAYNCWIAACLYVITLLVSG 59

Query: 200 HQFWLNNRSSVSM 238
           HQF+LN+R+S+SM
Sbjct: 60  HQFYLNSRNSISM 72


>UniRef50_A7RHU7 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 88

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 28/75 (37%), Positives = 47/75 (62%)
 Frame = +2

Query: 2   IIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFXIEVEKGYTLNAQNCWIAALXYLI 181
           +I L L+GVF+  +++AL+ED+P D+              + G++  A+NC+IAA  Y +
Sbjct: 21  VIMLLLLGVFFKTKSIALVEDIPKDKG-------------DAGFSSTAKNCFIAAGIYGV 67

Query: 182 TLVVSGHQFWLNNRS 226
           TL++S HQ W+N R+
Sbjct: 68  TLIISIHQKWVNART 82


>UniRef50_Q28WM7 Cluster: GA10879-PA; n=1; Drosophila
           pseudoobscura|Rep: GA10879-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 94

 Score = 53.6 bits (123), Expect = 5e-06
 Identities = 26/65 (40%), Positives = 41/65 (63%)
 Frame = +2

Query: 2   IIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFXIEVEKGYTLNAQNCWIAALXYLI 181
           +IQLTLMG+F+ + ++AL++DLP       HS+EDF    +  Y + A  C++ AL YL 
Sbjct: 19  VIQLTLMGIFFLLNSMALIDDLPLTPIF--HSLEDFRTHADVTYQVVAIRCFVTALLYLC 76

Query: 182 TLVVS 196
             ++S
Sbjct: 77  FGILS 81


>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = -1

Query: 542 KWADDLWQYAGKNWMRKVEDRSL*RTMGEVYIQQWRDTG 426
           +W DDL + AG  WM+  +DRSL +++GE ++QQW   G
Sbjct: 459 RWTDDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWTSFG 497


>UniRef50_Q20589 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 95

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +2

Query: 2   IIQLTLMGVFYYIRAVALLEDLPFD-EKNPPHSIEDFXIEVEKGYTLNAQNCWIAALXYL 178
           +I L L+GVF+YI+AV L  DL F+     P S+      ++  Y   A  CWIAA  Y 
Sbjct: 24  VIFLGLLGVFFYIQAVTLFPDLHFEGHGKVPSSV------IDAKYNEKATQCWIAAGLYA 77

Query: 179 ITLVVSGHQFWLNNRSSVSM 238
           +TL+     FW N  ++  +
Sbjct: 78  VTLIA---VFWQNKYNTAQI 94


>UniRef50_Q9NDV2 Cluster: Ribonuclease precursor; n=1; Ceratitis
           capitata|Rep: Ribonuclease precursor - Ceratitis
           capitata (Mediterranean fruit fly)
          Length = 138

 Score = 47.2 bits (107), Expect = 4e-04
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = +2

Query: 2   IIQLTLM-GVFYYIRAVALLEDLPFDEKNPPHSIEDFXIEVEKGYTLNA 145
           IIQL LM G+F+YI +VAL+EDLP DE+   +S+E+F       Y  NA
Sbjct: 77  IIQLVLMMGLFFYINSVALIEDLPIDEEF--NSVEEFYTAATSAYNQNA 123


>UniRef50_Q9W286 Cluster: CG11269-PA; n=1; Drosophila
           melanogaster|Rep: CG11269-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 107

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +2

Query: 5   IQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFXIEVEKGYTLNAQNCWIAALXYL 178
           + L L+G+F+Y++++ LLE LP     P  S E F  + ++ Y   +  C++AA+ YL
Sbjct: 20  LMLNLLGIFFYVQSLMLLESLPLPHHFP--SQEAFKEQADEAYQDVSTRCFVAAVFYL 75


>UniRef50_O02142 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 93

 Score = 41.1 bits (92), Expect = 0.026
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 11  LTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFXIEVEKGYTLNAQNCWIAALXYL 178
           + ++G  +Y ++V L EDLP + K    S+  D      K Y  NA NCWIA   Y+
Sbjct: 21  MAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLYQQNAYNCWIACGVYI 77


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 542 KWADDLWQYAGK-NWMRKVEDRSL*RTMGEVYIQQWRDTG 426
           +W D+L Q+ G+ NW ++  +R +     E +I QW D G
Sbjct: 398 RWRDELQQFWGQTNWHQQALNRGIWNHHAEAFILQWIDNG 437


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,879,638
Number of Sequences: 1657284
Number of extensions: 12139217
Number of successful extensions: 23574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23564
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)