Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30853
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   1.5  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.0  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 446  GCKPLP*SVTMNDPLPFASNFFQHIATSHQPTYLNKTFK 562
            GC PLP      D  P     FQ +  +H   YL+K FK
Sbjct: 2286 GCAPLPIFALTADMQPTMETQFQEVGITH---YLSKPFK 2321


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 434 LSTAGCKPLP*SVTMNDPLPFASNFFQHIATSHQPTY 544
           L  AGCK +   V   D +PFAS+FF    T+  PT+
Sbjct: 169 LIKAGCKNV---VIRCDDIPFASDFFCSRETNMPPTW 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,371
Number of Sequences: 5004
Number of extensions: 55879
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)