BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30853 (704 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical p... 48 7e-06 U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical pr... 41 8e-04 U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 31 0.80 U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 31 0.80 M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 31 0.80 Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical pr... 29 2.4 >Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical protein F49C12.12 protein. Length = 95 Score = 48.0 bits (109), Expect = 7e-06 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = +2 Query: 2 IIQLTLMGVFYYIRAVALLEDLPFD-EKNPPHSIEDFXIEVEKGYTLNAQNCWIAALXYL 178 +I L L+GVF+YI+AV L DL F+ P S+ ++ Y A CWIAA Y Sbjct: 24 VIFLGLLGVFFYIQAVTLFPDLHFEGHGKVPSSV------IDAKYNEKATQCWIAAGLYA 77 Query: 179 ITLVVSGHQFWLNNRSSVSM 238 +TL+ FW N ++ + Sbjct: 78 VTLIA---VFWQNKYNTAQI 94 >U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical protein C46G7.1 protein. Length = 93 Score = 41.1 bits (92), Expect = 8e-04 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +2 Query: 11 LTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFXIEVEKGYTLNAQNCWIAALXYL 178 + ++G +Y ++V L EDLP + K S+ D K Y NA NCWIA Y+ Sbjct: 21 MAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLYQQNAYNCWIACGVYI 77 >U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated protein 104, isoforma protein. Length = 1584 Score = 31.1 bits (67), Expect = 0.80 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -2 Query: 262 KITTPSILHTN*GTIIQPKLMSRYNQCNQVXQCR-NPTILCIQGISFFHFNXEVFDR 95 ++TTP++LHT I+ + RYN + Q R N + Q I + + E+ D+ Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595 >U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated protein 104, isoformb protein. Length = 1628 Score = 31.1 bits (67), Expect = 0.80 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -2 Query: 262 KITTPSILHTN*GTIIQPKLMSRYNQCNQVXQCR-NPTILCIQGISFFHFNXEVFDR 95 ++TTP++LHT I+ + RYN + Q R N + Q I + + E+ D+ Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595 >M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related protein protein. Length = 1584 Score = 31.1 bits (67), Expect = 0.80 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -2 Query: 262 KITTPSILHTN*GTIIQPKLMSRYNQCNQVXQCR-NPTILCIQGISFFHFNXEVFDR 95 ++TTP++LHT I+ + RYN + Q R N + Q I + + E+ D+ Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595 >Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical protein W01D2.3 protein. Length = 243 Score = 29.5 bits (63), Expect = 2.4 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 89 PHSIEDFXIEVEKGYTLNAQNCWIAALXYLITLVV 193 PHS E E+E+ + ++C+ AL L+TLV+ Sbjct: 81 PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,921,351 Number of Sequences: 27780 Number of extensions: 303960 Number of successful extensions: 696 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 684 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 695 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1634564590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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