Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30853
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    48   7e-06
U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical pr...    41   8e-04
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    31   0.80 
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    31   0.80 
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    31   0.80 
Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical pr...    29   2.4  

>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +2

Query: 2   IIQLTLMGVFYYIRAVALLEDLPFD-EKNPPHSIEDFXIEVEKGYTLNAQNCWIAALXYL 178
           +I L L+GVF+YI+AV L  DL F+     P S+      ++  Y   A  CWIAA  Y 
Sbjct: 24  VIFLGLLGVFFYIQAVTLFPDLHFEGHGKVPSSV------IDAKYNEKATQCWIAAGLYA 77

Query: 179 ITLVVSGHQFWLNNRSSVSM 238
           +TL+     FW N  ++  +
Sbjct: 78  VTLIA---VFWQNKYNTAQI 94


>U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical
           protein C46G7.1 protein.
          Length = 93

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 11  LTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFXIEVEKGYTLNAQNCWIAALXYL 178
           + ++G  +Y ++V L EDLP + K    S+  D      K Y  NA NCWIA   Y+
Sbjct: 21  MAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLYQQNAYNCWIACGVYI 77


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 262 KITTPSILHTN*GTIIQPKLMSRYNQCNQVXQCR-NPTILCIQGISFFHFNXEVFDR 95
           ++TTP++LHT    I+    + RYN   +  Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 262 KITTPSILHTN*GTIIQPKLMSRYNQCNQVXQCR-NPTILCIQGISFFHFNXEVFDR 95
           ++TTP++LHT    I+    + RYN   +  Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 262 KITTPSILHTN*GTIIQPKLMSRYNQCNQVXQCR-NPTILCIQGISFFHFNXEVFDR 95
           ++TTP++LHT    I+    + RYN   +  Q R N   +  Q I + +   E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595


>Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical
           protein W01D2.3 protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 89  PHSIEDFXIEVEKGYTLNAQNCWIAALXYLITLVV 193
           PHS E    E+E+ +    ++C+  AL  L+TLV+
Sbjct: 81  PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,351
Number of Sequences: 27780
Number of extensions: 303960
Number of successful extensions: 696
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)