Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30853
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    29   4.0  
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    27   9.2  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    27   9.2  

>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 390 HITQPIKTSSSSACISPLLDVNLSHSPS 473
           H +  + +SSSS  +SP   +NLS SPS
Sbjct: 22  HHSSSLSSSSSSLSLSPKQPINLSSSPS 49


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 68   PFDEKNPPHSIEDFXIEVEK 127
            PF ++ P H+IED  +E EK
Sbjct: 1173 PFQKEGPAHNIEDDWLETEK 1192


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 68   PFDEKNPPHSIEDFXIEVEK 127
            PF ++ P H+IED  +E EK
Sbjct: 1172 PFQKEGPAHNIEDDWLETEK 1191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,768,245
Number of Sequences: 28952
Number of extensions: 269586
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)