Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30852
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 46 2e-06
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 30 0.18
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 29 0.23
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 0.94
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 1.2
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 25 5.0
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 25 6.7
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 24 8.8
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 24 8.8
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 46.4 bits (105), Expect = 2e-06
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +2
Query: 119 LDFYSQFNPSPLSIKQFIDFGLNACESKSFT---FLKKELPVRLANIMKEIALLPENLLR 289
++ +Q+ + LS+KQ + FG N F FL+ ELP+RLA ++++ L L
Sbjct: 12 VNLLAQYPQTGLSLKQLVYFGKNPTPGTLFRAGLFLRDELPIRLARRIQDLQNLSPMLRS 71
Query: 290 MPSVGLVNQWYERSFEEITRFEQME 364
M + V Y RS EEI + +E
Sbjct: 72 MKRISSVKAAYGRSMEEIIELKGVE 96
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 29.9 bits (64), Expect = 0.18
Identities = 28/115 (24%), Positives = 51/115 (44%)
Frame = +2
Query: 80 RLAGAIFTNVTKMLDFYSQFNPSPLSIKQFIDFGLNACESKSFTFLKKELPVRLANIMKE 259
RL +T + +M+DF+S F+ S K+ +D L E + T K++ L +++
Sbjct: 977 RLIQNEYTTLCEMVDFFSSFSLRECSFKE-VDLALELLERATIT---KDVYFYLKDLVYR 1032
Query: 260 IALLPENLLRMPSVGLVNQWYERSFEEITRFEQMEPDPPTLTQFCERLVHIRNRH 424
LL N + ++ E SF + + +E D Q E +H ++H
Sbjct: 1033 RFLLQVNWAEIID---AHEDLESSFFPMVKEIMLESDFLIWLQHMEHNIHDESKH 1084
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 29.5 bits (63), Expect = 0.23
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 EIALLPENLLRMPSVGLVNQWYERSF-EEITRFEQMEPDPPTLTQFCERLV 406
++A L ++L PSV + W E EE+ F ++ P P + T+ ERL+
Sbjct: 346 DMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLL 396
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 0.94
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 23 KLLYYFSNT*IFIRETFKMRLAGAIFTNVTKMLDFYSQFNP 145
KL YYF+NT I E FK R + +V L F ++ P
Sbjct: 253 KLGYYFNNTSSTISEEFKKRNKECQYDSVLNRLTFPTEQYP 293
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.1 bits (57), Expect = 1.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 233 VRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEITRFE----QMEPDPPTLTQFCE- 397
+R+ IM+ A+L L P +GL + + +FE + + + E D TL F E
Sbjct: 1089 LRVQTIMRIFAILTRVLSDSPQIGLSLEKFLTNFEALIKMNVDILRDEIDKSTLNSFLES 1148
Query: 398 RLVHI 412
+VH+
Sbjct: 1149 AIVHV 1153
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 254 KEIALLPENLLRMPSVGL-VNQWYERSFEE 340
K++ L+PEN++ P G+ W E + EE
Sbjct: 253 KDLGLIPENVIPAPVDGMGTKSWDELTTEE 282
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 332 FEEITRFEQMEPDPPTLTQFCERLVHI 412
+++ FE+ + P + Q ERL+HI
Sbjct: 147 WDKYLEFEERQERPDNVFQLLERLIHI 173
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 24.2 bits (50), Expect = 8.8
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +2
Query: 59 IRETFKMRLAGAIFTNVTKMLDFYSQFN----PSPLSIKQFIDFGLNACESK 202
+RET + LA I ++ S P+P + ++F DF + E K
Sbjct: 477 VRETMPLTLASLIIGRDVLLVSAVSYLRYKSLPAPKTFRRFFDFAIPTTELK 528
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 293 PSVGLVNQWYERSFEEIT 346
P + LVN+WY E IT
Sbjct: 204 PPIELVNRWYAEPIEMIT 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,766
Number of Sequences: 5004
Number of extensions: 33661
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -