Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30852
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0089 + 14359650-14359889,14360859-14361120,14361633-143618... 50 8e-07
07_03_1419 - 26428539-26428778,26429512-26429659,26429896-264300... 45 3e-05
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 27 5.0
03_02_0714 + 10617860-10618588 27 6.6
12_01_0026 + 219663-220843,222201-222447,222574-224535 27 8.7
11_02_0040 - 7665220-7666656 27 8.7
11_01_0026 + 193383-194566,195726-195972,196099-198063 27 8.7
06_01_0550 + 3911397-3911624,3912213-3912472,3912896-3913226,391... 27 8.7
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 27 8.7
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800... 27 8.7
>03_03_0089 +
14359650-14359889,14360859-14361120,14361633-14361813,
14362141-14362288,14362836-14363040,14363304-14363362
Length = 364
Score = 50.0 bits (114), Expect = 8e-07
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +2
Query: 152 LSIKQFIDFGLNACES---KSFTFLKKELPVRLANIMKEIALLPENLLRMPSVGLVNQWY 322
++++ ++FG E +S FL++ELP+R+A ++ LP L P++ V WY
Sbjct: 26 VTLRYMMEFGARPTERNLLRSAQFLRRELPIRIARRALDLDSLPFGLSTKPAILKVRDWY 85
Query: 323 ERSFEEITRFEQMEPDPPTLTQFCERLVHIRNRHADVV 436
SF ++ F ++ L F E + IR RH +VV
Sbjct: 86 LDSFRDLRCFPEVRNRDDELA-FTEMIKMIRVRHNNVV 122
>07_03_1419 -
26428539-26428778,26429512-26429659,26429896-26430076,
26430285-26430546,26430946-26430975,26431355-26431591
Length = 365
Score = 44.8 bits (101), Expect = 3e-05
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Frame = +2
Query: 152 LSIKQFIDFGLNACESK---SFTFLKKELPVRLANIMKEIALLPENLLRMP--------- 295
+S++ ++FG E S FL+KELP+R+A E+ LP L R P
Sbjct: 25 VSLRYMMEFGSRPTERNLLLSAQFLQKELPIRIARRALELESLPFGLSRKPAILKVILGE 84
Query: 296 -SVGLVNQWYERSFEEITRFEQMEPDPPTLTQFCERLVHIRNRHADVV 436
SV V WY SF +I F ++ L F + + I+ RH +VV
Sbjct: 85 WSVNKVRDWYLDSFRDIRYFPEVRNRNDELA-FTQMIKMIKVRHNNVV 131
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 345 VISSNERSYHWLTKPTEGIRSRFSGSSAIS 256
+I + E ++ WL + + I FSGSS IS
Sbjct: 770 IIEARETAWSWLKENWDRISEAFSGSSLIS 799
>03_02_0714 + 10617860-10618588
Length = 242
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = -2
Query: 222 FFRNVNDLLSQAFRPKSMNCLMDNGEGLNCE*KSSIFVTFVKIAPANLILKVSRIN 55
F +NVN L + P ++ L GEG+ + +++ + PA+L+ ++ R++
Sbjct: 86 FVQNVNALRAHPHPPPAVALLAYGGEGVYYFLEQFVWLAKAGLLPAHLLPRLQRLS 141
>12_01_0026 + 219663-220843,222201-222447,222574-224535
Length = 1129
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 372 GSGSICSKRVISSNERSYHWLTKPTEGI 289
GS S CSKRV +ERS H + K + +
Sbjct: 638 GSSSTCSKRV-EDSERSVHLVPKKVDDL 664
>11_02_0040 - 7665220-7666656
Length = 478
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 136 VQPFAVVHQTIHRLRSERLREQIIHV-PKKGATSQAREHNE 255
V P+A V + I RL + LRE+++H P+ A + R E
Sbjct: 225 VLPYADVSELIERLDTPPLRERMVHFSPESLAALKERARQE 265
>11_01_0026 + 193383-194566,195726-195972,196099-198063
Length = 1131
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 372 GSGSICSKRVISSNERSYHWLTKPTEGI 289
GS S CSKRV +ERS H + K + +
Sbjct: 639 GSSSTCSKRV-EDSERSVHLVPKKVDDL 665
>06_01_0550 +
3911397-3911624,3912213-3912472,3912896-3913226,
3913483-3913728
Length = 354
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 200 KSFTFLKKELPVRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEITRFEQMEPDP 373
KSF + E +++ + +I L LL + L+NQ+ +R+ RF P P
Sbjct: 160 KSFRDILHEYTLKIKTVKNDILLALAKLLELDEDCLLNQFSDRAI-TTARFNYYSPCP 216
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/72 (25%), Positives = 28/72 (38%)
Frame = +1
Query: 199 QIIHVPKKGATSQAREHNEGDSATP*EPTSNAFGGLSQPMVRALIRGNNTL*TDGTRSSD 378
Q +H P + + + G SAT S+ S + + G++T S D
Sbjct: 57 QAVHHPPWATSGVSCTISSGSSATSSCTISSGSSATSSCTISSSSSGSSTSTVSACTSQD 116
Query: 379 ADPILRTSCPHK 414
T+CPHK
Sbjct: 117 KVSPSSTACPHK 128
>01_01_1010 -
7996921-7997673,7999212-7999399,7999688-7999784,
8000420-8000767,8001130-8001231,8001432-8001501,
8001747-8001802,8001891-8002010
Length = 577
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 368 DPPTLTQFCERLVHIRNRHADVV 436
D PTL C RL + RH+DVV
Sbjct: 517 DIPTLVNTCGRLRFLELRHSDVV 539
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,264
Number of Sequences: 37544
Number of extensions: 212098
Number of successful extensions: 577
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -