Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30852
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.)               72   2e-13
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)                      28   3.8  
SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  

>SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 35/57 (61%), Positives = 42/57 (73%)
 Frame = +2

Query: 185 NACESKSFTFLKKELPVRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEITRFE 355
           NA    S+ F K ELPVRLA+I++EI LLP+NLLRMPSV LV  WY +SF E+  FE
Sbjct: 274 NAKPVDSYRFGKHELPVRLAHIIREIDLLPKNLLRMPSVELVRSWYVQSFSELLEFE 330


>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 151 VVHQTIHRLRSERLREQIIHVPKKGATSQAREHNEGDSATP*EPTSNAFGGLSQPMVRAL 330
           ++HQ +  + S   + +  ++  K A  + RE  + +  +P      A  G+ +P   + 
Sbjct: 611 ILHQAVSVITSLESQVRERNLNPKAACLKRREEEKVEEESP---EKRAVPGVDKPFDNSA 667

Query: 331 IRGNNTL*TDGTRSS 375
           +RGNN     G RSS
Sbjct: 668 VRGNNRAGRRGRRSS 682


>SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)
          Length = 441

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 152 LSIKQFIDFGLNACESKSFTFLKKELPVR 238
           LS+ + ID+GL   E++ F  L+K  P+R
Sbjct: 19  LSLAKAIDYGLMCAENRFFPLLEKPHPLR 47


>SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 327 RSYHWLTKPTEGIRSRFSGSSAISFI 250
           R +HWLTK  E  R+  + +S IS I
Sbjct: 152 RGFHWLTKSFENARANQNDASQISSI 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,082
Number of Sequences: 59808
Number of extensions: 236272
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)