BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30852 (436 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 2e-13 SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95 SB_3622| Best HMM Match : K167R (HMM E-Value=1.5) 28 3.8 SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8 >SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 339 Score = 71.7 bits (168), Expect = 2e-13 Identities = 35/57 (61%), Positives = 42/57 (73%) Frame = +2 Query: 185 NACESKSFTFLKKELPVRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEITRFE 355 NA S+ F K ELPVRLA+I++EI LLP+NLLRMPSV LV WY +SF E+ FE Sbjct: 274 NAKPVDSYRFGKHELPVRLAHIIREIDLLPKNLLRMPSVELVRSWYVQSFSELLEFE 330 >SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 728 Score = 29.9 bits (64), Expect = 0.95 Identities = 19/75 (25%), Positives = 35/75 (46%) Frame = +1 Query: 151 VVHQTIHRLRSERLREQIIHVPKKGATSQAREHNEGDSATP*EPTSNAFGGLSQPMVRAL 330 ++HQ + + S + + ++ K A + RE + + +P A G+ +P + Sbjct: 611 ILHQAVSVITSLESQVRERNLNPKAACLKRREEEKVEEESP---EKRAVPGVDKPFDNSA 667 Query: 331 IRGNNTL*TDGTRSS 375 +RGNN G RSS Sbjct: 668 VRGNNRAGRRGRRSS 682 >SB_3622| Best HMM Match : K167R (HMM E-Value=1.5) Length = 441 Score = 27.9 bits (59), Expect = 3.8 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +2 Query: 152 LSIKQFIDFGLNACESKSFTFLKKELPVR 238 LS+ + ID+GL E++ F L+K P+R Sbjct: 19 LSLAKAIDYGLMCAENRFFPLLEKPHPLR 47 >SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 522 Score = 27.9 bits (59), Expect = 3.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 327 RSYHWLTKPTEGIRSRFSGSSAISFI 250 R +HWLTK E R+ + +S IS I Sbjct: 152 RGFHWLTKSFENARANQNDASQISSI 177 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,557,082 Number of Sequences: 59808 Number of extensions: 236272 Number of successful extensions: 563 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 531 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 563 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 834771332 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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