BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30852 (436 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.48 EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1 EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1 EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1 EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1 EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1 EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.1 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.1 AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 3.4 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 7.9 >AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic acetylcholine receptoralpha7-1 protein. Length = 555 Score = 24.6 bits (51), Expect = 0.48 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = -1 Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335 P PY+D TF + +RR ++ F+L C + Sbjct: 215 PEPYIDITFVVIIRRRTLYYFFNLIVPCVLI 245 >EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 6 protein. Length = 461 Score = 23.4 bits (48), Expect = 1.1 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -1 Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335 P PYVD TF +RR ++ F+L C + Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208 >EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 461 Score = 23.4 bits (48), Expect = 1.1 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -1 Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335 P PYVD TF +RR ++ F+L C + Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208 >EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 461 Score = 23.4 bits (48), Expect = 1.1 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -1 Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335 P PYVD TF +RR ++ F+L C + Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208 >EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 461 Score = 23.4 bits (48), Expect = 1.1 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -1 Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335 P PYVD TF +RR ++ F+L C + Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208 >EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 461 Score = 23.4 bits (48), Expect = 1.1 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -1 Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335 P PYVD TF +RR ++ F+L C + Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 23.4 bits (48), Expect = 1.1 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -1 Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335 P PYVD TF +RR ++ F+L C + Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 23.4 bits (48), Expect = 1.1 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -1 Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335 P PYVD TF +RR ++ F+L C + Sbjct: 246 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 276 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 23.4 bits (48), Expect = 1.1 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -1 Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335 P PYVD TF +RR ++ F+L C + Sbjct: 246 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 276 >AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor protein. Length = 587 Score = 21.8 bits (44), Expect = 3.4 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +3 Query: 123 ISTRSSTLRRCPSNNS*TSV 182 ++T+ +TL R PS S TSV Sbjct: 351 LNTKCNTLERTPSKCSQTSV 370 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 20.6 bits (41), Expect = 7.9 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -2 Query: 354 SKRVISSNERSYHWLTKPT 298 S ISS+E + W KPT Sbjct: 374 SSSSISSSEENDFWQPKPT 392 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 117,122 Number of Sequences: 438 Number of extensions: 2251 Number of successful extensions: 11 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11 length of database: 146,343 effective HSP length: 52 effective length of database: 123,567 effective search space used: 11368164 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
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