Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30852
(436 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.48
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.1
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 3.4
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 7.9
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 24.6 bits (51), Expect = 0.48
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335
P PY+D TF + +RR ++ F+L C +
Sbjct: 215 PEPYIDITFVVIIRRRTLYYFFNLIVPCVLI 245
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335
P PYVD TF +RR ++ F+L C +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335
P PYVD TF +RR ++ F+L C +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335
P PYVD TF +RR ++ F+L C +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335
P PYVD TF +RR ++ F+L C +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335
P PYVD TF +RR ++ F+L C +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335
P PYVD TF +RR ++ F+L C +
Sbjct: 178 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 208
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335
P PYVD TF +RR ++ F+L C +
Sbjct: 246 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 276
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 421 PVPYVDKTFAELGQRRRIW--FHLFKACYFL 335
P PYVD TF +RR ++ F+L C +
Sbjct: 246 PEPYVDVTFTIQIRRRTLYYFFNLIVPCVLI 276
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 3.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 123 ISTRSSTLRRCPSNNS*TSV 182
++T+ +TL R PS S TSV
Sbjct: 351 LNTKCNTLERTPSKCSQTSV 370
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 20.6 bits (41), Expect = 7.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 354 SKRVISSNERSYHWLTKPT 298
S ISS+E + W KPT
Sbjct: 374 SSSSISSSEENDFWQPKPT 392
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,122
Number of Sequences: 438
Number of extensions: 2251
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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