SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30852
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06483.1 68416.m00751 pyruvate dehydrogenase (lipoamide) kina...    51   4e-07
At5g07850.1 68418.m00902 transferase family protein similar to a...    29   1.0  
At2g18710.1 68415.m02179 preprotein translocase secY subunit, ch...    28   3.1  
At3g05430.1 68416.m00595 PWWP domain-containing protein contains...    27   4.1  
At4g29360.2 68417.m04195 glycosyl hydrolase family 17 protein si...    27   5.5  
At4g29360.1 68417.m04194 glycosyl hydrolase family 17 protein si...    27   5.5  
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    27   7.2  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    27   7.2  
At2g31620.1 68415.m03863 receptor-like protein kinase-related co...    27   7.2  
At1g44130.1 68414.m05097 nucellin protein, putative similar to n...    27   7.2  
At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domai...    26   9.5  

>At3g06483.1 68416.m00751 pyruvate dehydrogenase (lipoamide) kinase
           (PDHK) nearly identical to pyruvate dehydrogenase kinase
           [Arabidopsis thaliana] GI:3641834
          Length = 369

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
 Frame = +2

Query: 152 LSIKQFIDFGLNACESK---SFTFLKKELPVRLANIMKEIALLPENLLRMPSVGLVNQWY 322
           +S++  ++FG    E     S  FL KELP+R+A    E+  LP  L   P+V  V  WY
Sbjct: 29  VSLRYMMEFGSKPTERNLLISAQFLHKELPIRVARRAIELQTLPYGLSDKPAVLKVRDWY 88

Query: 323 ERSFEEITRFEQMEPDPPTLTQFCERLVHIRNRHADVV 436
             SF ++  F +++ D      F + +  ++ RH +VV
Sbjct: 89  LESFRDMRAFPEIK-DSGDEKDFTQMIKAVKVRHNNVV 125


>At5g07850.1 68418.m00902 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 456

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 142 PFAVVHQTIHRLRSERLREQIIHVPKKGATSQAREHNEGDSATP*EPTSNAFGGLSQPMV 321
           PF    + I R  S  L+E+I H   +  TS   + NE    T    T ++F  L+  M 
Sbjct: 224 PFTHSDEFISRFESPVLKERIFHFSSETITSLKSKANEESRTT----TISSFQALAAFMW 279

Query: 322 RALIRGNN 345
           R + R  N
Sbjct: 280 RCITRARN 287


>At2g18710.1 68415.m02179 preprotein translocase secY subunit,
           chloroplast (CpSecY) Identical to SP|Q38885 Preprotein
           translocase secY subunit, chloroplast precursor (CpSecY)
           {Arabidopsis thaliana}
          Length = 551

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 285 SRFSGSSAISFIMFASLTGSSFFRNVNDLLSQAF 184
           +RF+G SA+  + FA   G SF+   N LL   F
Sbjct: 402 ARFTGISALKNVAFALTPGGSFYLPTNILLIAFF 435


>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
           Pfam profile:PF00855 PWWP domain
          Length = 965

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 219 FRNVNDLLSQAFRPKSMNCLMDNGEGLN 136
           F   ++   QAFR +S+ CLM   E LN
Sbjct: 313 FEEFDETYEQAFRARSVYCLMKTHEPLN 340


>At4g29360.2 68417.m04195 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 488

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 256 GDSATP*EPTSNAFGGLSQPMVRALIRGNNTL 351
           G++ TP  PT++  G    P    +I GN+T+
Sbjct: 347 GENTTPVSPTNSTTGTSPSPSSSPIINGNSTV 378


>At4g29360.1 68417.m04194 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 534

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 256 GDSATP*EPTSNAFGGLSQPMVRALIRGNNTL 351
           G++ TP  PT++  G    P    +I GN+T+
Sbjct: 347 GENTTPVSPTNSTTGTSPSPSSSPIINGNSTV 378


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 221  KELPVRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEITRFEQMEPD 370
            +E  + L  ++ +     E +  +PS+  VN+   RS EE+  F+QM+ +
Sbjct: 1502 EERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEE 1551


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 221  KELPVRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEITRFEQMEPD 370
            +E  + L  ++ +     E +  +PS+  VN+   RS EE+  F+QM+ +
Sbjct: 1501 EERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEE 1550


>At2g31620.1 68415.m03863 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; similar to receptor-like protein
           kinase 4 (GI:13506745) and receptor-like protein kinase
           5 (GI:13506747) [Arabidopsis thaliana]
          Length = 255

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 111 RKCLISTRSSTLRRCPSN 164
           R CL +  S  LRRCP+N
Sbjct: 98  RSCLFTAFSGILRRCPNN 115


>At1g44130.1 68414.m05097 nucellin protein, putative similar to
           nucellin GI:2290202 from [Hordeum vulgare]
          Length = 405

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 126 KSSIFVTFVKIAPANLILKVS 64
           KSSIF TF+K +P++++  +S
Sbjct: 20  KSSIFKTFIKSSPSSVVFPLS 40


>At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 793

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
 Frame = +2

Query: 122 DFYSQFNPSPLSIKQFID-FGLNACESKSFTFLKKELPVRLANIMKEIALLPEN---LLR 289
           D YS+ +PSP++       +     E+     +K + P  L  +  ++ ++      L +
Sbjct: 257 DVYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFVIRNLGLFLRK 316

Query: 290 MPSV-----GLVNQWYERSFEEI 343
            P V     GLV++W  R FEE+
Sbjct: 317 FPQVSVDVVGLVDEWAARFFEEL 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,908,352
Number of Sequences: 28952
Number of extensions: 172639
Number of successful extensions: 524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -