Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30852
(436 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06483.1 68416.m00751 pyruvate dehydrogenase (lipoamide) kina... 51 4e-07
At5g07850.1 68418.m00902 transferase family protein similar to a... 29 1.0
At2g18710.1 68415.m02179 preprotein translocase secY subunit, ch... 28 3.1
At3g05430.1 68416.m00595 PWWP domain-containing protein contains... 27 4.1
At4g29360.2 68417.m04195 glycosyl hydrolase family 17 protein si... 27 5.5
At4g29360.1 68417.m04194 glycosyl hydrolase family 17 protein si... 27 5.5
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 27 7.2
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 27 7.2
At2g31620.1 68415.m03863 receptor-like protein kinase-related co... 27 7.2
At1g44130.1 68414.m05097 nucellin protein, putative similar to n... 27 7.2
At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domai... 26 9.5
>At3g06483.1 68416.m00751 pyruvate dehydrogenase (lipoamide) kinase
(PDHK) nearly identical to pyruvate dehydrogenase kinase
[Arabidopsis thaliana] GI:3641834
Length = 369
Score = 50.8 bits (116), Expect = 4e-07
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Frame = +2
Query: 152 LSIKQFIDFGLNACESK---SFTFLKKELPVRLANIMKEIALLPENLLRMPSVGLVNQWY 322
+S++ ++FG E S FL KELP+R+A E+ LP L P+V V WY
Sbjct: 29 VSLRYMMEFGSKPTERNLLISAQFLHKELPIRVARRAIELQTLPYGLSDKPAVLKVRDWY 88
Query: 323 ERSFEEITRFEQMEPDPPTLTQFCERLVHIRNRHADVV 436
SF ++ F +++ D F + + ++ RH +VV
Sbjct: 89 LESFRDMRAFPEIK-DSGDEKDFTQMIKAVKVRHNNVV 125
>At5g07850.1 68418.m00902 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 456
Score = 29.5 bits (63), Expect = 1.0
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 142 PFAVVHQTIHRLRSERLREQIIHVPKKGATSQAREHNEGDSATP*EPTSNAFGGLSQPMV 321
PF + I R S L+E+I H + TS + NE T T ++F L+ M
Sbjct: 224 PFTHSDEFISRFESPVLKERIFHFSSETITSLKSKANEESRTT----TISSFQALAAFMW 279
Query: 322 RALIRGNN 345
R + R N
Sbjct: 280 RCITRARN 287
>At2g18710.1 68415.m02179 preprotein translocase secY subunit,
chloroplast (CpSecY) Identical to SP|Q38885 Preprotein
translocase secY subunit, chloroplast precursor (CpSecY)
{Arabidopsis thaliana}
Length = 551
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 285 SRFSGSSAISFIMFASLTGSSFFRNVNDLLSQAF 184
+RF+G SA+ + FA G SF+ N LL F
Sbjct: 402 ARFTGISALKNVAFALTPGGSFYLPTNILLIAFF 435
>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
Pfam profile:PF00855 PWWP domain
Length = 965
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 219 FRNVNDLLSQAFRPKSMNCLMDNGEGLN 136
F ++ QAFR +S+ CLM E LN
Sbjct: 313 FEEFDETYEQAFRARSVYCLMKTHEPLN 340
>At4g29360.2 68417.m04195 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 488
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 256 GDSATP*EPTSNAFGGLSQPMVRALIRGNNTL 351
G++ TP PT++ G P +I GN+T+
Sbjct: 347 GENTTPVSPTNSTTGTSPSPSSSPIINGNSTV 378
>At4g29360.1 68417.m04194 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 534
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 256 GDSATP*EPTSNAFGGLSQPMVRALIRGNNTL 351
G++ TP PT++ G P +I GN+T+
Sbjct: 347 GENTTPVSPTNSTTGTSPSPSSSPIINGNSTV 378
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 221 KELPVRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEITRFEQMEPD 370
+E + L ++ + E + +PS+ VN+ RS EE+ F+QM+ +
Sbjct: 1502 EERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEE 1551
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 221 KELPVRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEITRFEQMEPD 370
+E + L ++ + E + +PS+ VN+ RS EE+ F+QM+ +
Sbjct: 1501 EERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEE 1550
>At2g31620.1 68415.m03863 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069; similar to receptor-like protein
kinase 4 (GI:13506745) and receptor-like protein kinase
5 (GI:13506747) [Arabidopsis thaliana]
Length = 255
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 111 RKCLISTRSSTLRRCPSN 164
R CL + S LRRCP+N
Sbjct: 98 RSCLFTAFSGILRRCPNN 115
>At1g44130.1 68414.m05097 nucellin protein, putative similar to
nucellin GI:2290202 from [Hordeum vulgare]
Length = 405
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -2
Query: 126 KSSIFVTFVKIAPANLILKVS 64
KSSIF TF+K +P++++ +S
Sbjct: 20 KSSIFKTFIKSSPSSVVFPLS 40
>At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 793
Score = 26.2 bits (55), Expect = 9.5
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +2
Query: 122 DFYSQFNPSPLSIKQFID-FGLNACESKSFTFLKKELPVRLANIMKEIALLPEN---LLR 289
D YS+ +PSP++ + E+ +K + P L + ++ ++ L +
Sbjct: 257 DVYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTVDLFVIRNLGLFLRK 316
Query: 290 MPSV-----GLVNQWYERSFEEI 343
P V GLV++W R FEE+
Sbjct: 317 FPQVSVDVVGLVDEWAARFFEEL 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,908,352
Number of Sequences: 28952
Number of extensions: 172639
Number of successful extensions: 524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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