Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30850
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0373 + 2897874-2898911                                           31   0.97 
10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176...    29   3.0  
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           28   5.2  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    28   5.2  
10_01_0160 - 1812213-1813790                                           27   9.0  

>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +1

Query: 436 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTTAGAA 612
           L+ ++A  P   S  + TTT  AAT     T  S+  TS T     +  TS T  A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTSTT----SNGATSVTAAATAA 308


>10_01_0154 -
           1764554-1764727,1764829-1764927,1765710-1766172,
           1766255-1766541
          Length = 340

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -3

Query: 593 VNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVINDEALV 420
           V DV  SS    V  + N  VS G+KT ++ P+V     ++  +  + T V+ND  L+
Sbjct: 157 VEDVEISSQTLKVLTIKNTHVSYGNKTTISTPSVTY---LKLWSPLNGTYVLNDMPLL 211


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -3

Query: 617 IVAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 438
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 437 NDE 429
           ++E
Sbjct: 333 SEE 335


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 326 YSNLVALRYLKLLVQPQPRLL*WFLL 403
           Y+N  AL+YL      +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572


>10_01_0160 - 1812213-1813790
          Length = 525

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 259 IAVSASGAVTITASGTASARIFVLKSCGASV 351
           I   ASGA    A+  AS  +FV+KS G +V
Sbjct: 19  IGHGASGATVSLAADDASGELFVVKSAGDAV 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,769,162
Number of Sequences: 37544
Number of extensions: 191463
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)