BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30850 (619 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY307931-1|AAQ73825.1| 336|Homo sapiens intestinal mucin MUC3B ... 30 5.7 >AY307931-1|AAQ73825.1| 336|Homo sapiens intestinal mucin MUC3B precursor protein. Length = 336 Score = 30.3 bits (65), Expect = 5.7 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Frame = +1 Query: 421 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSL------ITSVTLAPVEDSI 582 T + +TS + P+ +I S T T PT T++L I S T AP + I Sbjct: 248 TTLKTAVTSTS--PITSTITSTNTVTSMTTTTSRPTATNTLSSLTSSILSSTPAPNTEVI 305 Query: 583 TSFTTT 600 TS TTT Sbjct: 306 TSHTTT 311 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 59,352,063 Number of Sequences: 237096 Number of extensions: 1080120 Number of successful extensions: 2559 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 2321 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2554 length of database: 76,859,062 effective HSP length: 87 effective length of database: 56,231,710 effective search space used: 6635341780 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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