Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30849
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22012| Best HMM Match : ERO1 (HMM E-Value=0)                        53   3e-07
SB_9861| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.52 
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)                    30   1.6  
SB_33735| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.13)            30   2.1  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)                29   3.7  
SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_52866| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)                 28   6.5  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_10009| Best HMM Match : CPL (HMM E-Value=2.5)                       28   8.5  

>SB_22012| Best HMM Match : ERO1 (HMM E-Value=0)
          Length = 400

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 1/172 (0%)
 Frame = +3

Query: 171 ILFALAIVQAVGYDTELTKPCD-STACFDELHGSLGDCSCKVDTIDFFNNVKIFPRIQSI 347
           I  + + V  V    E+ +P   S  CF +L G +  C C V+T+D  NN KI P +  +
Sbjct: 3   IAISTSFVYLVCLLREIVEPAGLSDQCFCKLKGKVEQCCCDVETVDKINN-KIHPILDEL 61

Query: 348 VTKDYFRFYKVNLKKECPFWADDSRCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATK 527
           V ++YF+F++ +      +   +     K  + +TC + S     T   N  +D+T +TK
Sbjct: 62  VKRNYFKFFRTS-----NYIMIEITFTFKGKYGETCQESS----NTTLGN--LDDTISTK 110

Query: 528 YSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWKVHDDAHDNFCESDD 683
             K   S  K  L  D                    W+ HD+  +NFC  DD
Sbjct: 111 GLKSFMSSAKDKLAFD-------------------TWRQHDNVEENFCALDD 143


>SB_9861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
 Frame = +3

Query: 312 NNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHIKTCTKESVPGYETGY 491
           +N  +F + + I+++ Y++F  V + ++C ++ DD     +  H  + T  SVP Y    
Sbjct: 196 DNKYVFKQHKLILSR-YYKFSLVFMNQDCDYFVDD-----RLYH--SLTSGSVPVY---M 244

Query: 492 NNEYVDE-TPAT-KYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWK 641
            ++ VD+  P   K S    SD K   +    L+YL    +A N+Y   KWK
Sbjct: 245 GSDKVDQFLPGNLKNSIIKVSDFKGPKELAEYLNYLMTNETAYNKYLEWKWK 296


>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
          Length = 942

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +3

Query: 444 IKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQY 623
           +K C  E         + E  DE   +  S  ++SD   D   D   S  +   +  +++
Sbjct: 553 VKECKGEEEQNKTDSSSEESEDELETSDDSSSSESDTSDDESDDDHKSEKSSIATDTSEH 612

Query: 624 EI-AKWKVHDDAHDNFCESDDRDADAD 701
              +     DD+ D   +SDD  +D+D
Sbjct: 613 PSDSSSDSGDDSDDESSDSDDEPSDSD 639


>SB_33735| Best HMM Match : Aminotran_1_2 (HMM E-Value=0.13)
          Length = 383

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 483 FHSQVHFPSCKSLYGSISLHTYCHQPRTG 397
           FH+++   SC ++YG +++   C  P+ G
Sbjct: 226 FHNRMTLYSCPNIYGQVAMGIVCQPPKPG 254


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +3

Query: 231 CDSTACFDELHGSLGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWA 410
           CD TAC D+ +    +C CK   +D FNN   +    S+V K + +  +VN + +  F++
Sbjct: 788 CDKTACSDKGY----ECFCKSGFLDVFNNTWFY----SLVCKSFGQ--RVNQQFQIDFFS 837


>SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)
          Length = 1133

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +3

Query: 366 RFYKVNLKKECPFWADDSRCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSKEAQ 545
           +F +V +++E   + D S   +   +   C K S+ G    Y++     +P  K  K + 
Sbjct: 751 KFDEVKIQEELSTFYDPSSITLASDY--ACFKYSMGGNLKLYDDHIALSSPKRKIKKPSY 808

Query: 546 SDCKSDLDHD 575
           S CK+  D+D
Sbjct: 809 SPCKTGSDYD 818


>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 552 CKSDLDHDPQLSYLNMTISAANQYEIAKWKVHDDAHDNFCESDDRDADAD 701
           C + + H P   YL++ +   N    A   V++D  D+     D D D D
Sbjct: 88  CDNSVPHKPHRQYLHLRLYLVNDRYNAAAAVNEDNDDDGDGDGDSDGDGD 137


>SB_52866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +3

Query: 342 SIVTKDYFRFY----KVNLKKECPFWADDSR-CAMKYC 440
           SI+T+ Y +FY    K+  +K C F+  D +  A KYC
Sbjct: 589 SIITQKYCKFYLRDGKLAAQKYCKFYLRDGKLAAQKYC 626



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +3

Query: 342 SIVTKDYFRFY----KVNLKKECPFWADDSR-CAMKYC 440
           SI+T+ Y +FY    K+  +K C F+  D +  A KYC
Sbjct: 779 SIITQKYCKFYLRDGKLAAQKYCKFYLRDGKLAAQKYC 816


>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
          Length = 567

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = +3

Query: 477 YETGYN-NEYVDET-PATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWKVHD 650
           Y   YN N+Y D       Y  +   D   D D+D    Y +      N Y    +   D
Sbjct: 114 YHKDYNDNDYDDYNYDDNDYDNDDYDDYNYD-DNDYDDVYEDDDAYDDNDYN--NYYDDD 170

Query: 651 DAHDNFCESDDRDAD 695
           D HD  CE+DD D D
Sbjct: 171 DYHDYVCENDDVDYD 185


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 456  TKESVPGYETGYNNEYVDETPATKYSKEAQS--DCKSDLDHDPQLSYLNMTISAANQYE 626
            TK    GY  GYN+    E  +++Y  + +   D   D     + SY +   S+ + YE
Sbjct: 1376 TKGRYNGYSNGYNDNQPKEKRSSEYQDDPRDNRDSYGDYSRSSRSSYEDHPRSSRSSYE 1434


>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 285 CKVDTIDFFNNV-KIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHI 446
           CK  T+ F  NV K+F +++S + +   +  K  +       A  S C +K C +
Sbjct: 150 CKYRTVGFEENVTKLFGKLRSAIPRRICKTCKRKIDSGYTLHACASHCGLKTCPV 204


>SB_10009| Best HMM Match : CPL (HMM E-Value=2.5)
          Length = 321

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
 Frame = -3

Query: 689 ITVITFTKIIMCIIVNFPFCYFILVG--------STNGHIQIAQLRI-VIQ 564
           + VI+F K+I C I+ F FC  +  G        S+  H++ AQL   VIQ
Sbjct: 48  LCVISFAKMIKCSIIYFVFCATLASGAALSEESKSSRRHVRSAQLNTNVIQ 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,111,529
Number of Sequences: 59808
Number of extensions: 454353
Number of successful extensions: 1479
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)