BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30849 (709 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL132877-13|CAC70110.4| 478|Caenorhabditis elegans Hypothetical... 97 1e-20 AL132877-14|CAD92388.1| 439|Caenorhabditis elegans Hypothetical... 37 0.012 AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical ... 33 0.15 U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 31 1.1 AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical ... 31 1.1 Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr... 30 1.4 AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 29 2.5 AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 29 2.5 AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 29 2.5 AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 29 2.5 AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical ... 29 2.5 AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 29 2.5 AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 29 2.5 Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical pr... 28 7.5 Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 27 9.9 Z49907-4|CAA90086.1| 454|Caenorhabditis elegans Hypothetical pr... 27 9.9 AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical ... 27 9.9 >AL132877-13|CAC70110.4| 478|Caenorhabditis elegans Hypothetical protein Y105E8B.8a protein. Length = 478 Score = 96.7 bits (230), Expect = 1e-20 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 2/152 (1%) Frame = +3 Query: 246 CFDELHGSLGDCSC-KVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSR 422 CF + ++ C C K TID NN +I+ ++Q ++ KD+FRFYKVN+ K CPFWADD + Sbjct: 28 CFCKGFEAVEPCDCSKPQTIDKLNNHRIYEKVQKLLKKDFFRFYKVNMDKTCPFWADDRQ 87 Query: 423 CAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMT 602 C C I C E VP G A +E D + D + ++ T Sbjct: 88 CGTNQCGIAFCDDE-VP---AGLRRRNAVNMEAAAVKEEEDDDAEKCADAGNNIDPMDRT 143 Query: 603 ISAANQYEIAKWKVHDDA-HDNFCESDDRDAD 695 + + ++ HDD D FCE +D ++D Sbjct: 144 LHDDEKRQLDAMDHHDDGLEDKFCEIEDDESD 175 >AL132877-14|CAD92388.1| 439|Caenorhabditis elegans Hypothetical protein Y105E8B.8b protein. Length = 439 Score = 37.1 bits (82), Expect = 0.012 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +3 Query: 384 LKKECPFWADDSRCAMKYCHIKTCTKESVPG 476 + K CPFWADD +C C I C E G Sbjct: 1 MDKTCPFWADDRQCGTNQCGIAFCDDEVPAG 31 >AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical protein F37C4.3 protein. Length = 685 Score = 33.5 bits (73), Expect = 0.15 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Frame = -1 Query: 535 LEYLVAGVSSTYSLLYPVS*PGTLSFVQVF--IWQYFI---AHLLSSAQNGHSFFKL 380 L+Y GV SL+Y S PGT++F VF IWQ+ I +LL S++ + +++ Sbjct: 168 LQYGYYGVIGLISLVYFYSVPGTVAFNSVFARIWQFMIGMVVYLLGSSKPTYPHYRV 224 >U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein ZK783.1 protein. Length = 2585 Score = 30.7 bits (66), Expect = 1.1 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3 Query: 225 KPCDSTACFDELHGSLGDCSCKVDTID 305 KPCDST + H S + SC+VDT+D Sbjct: 1538 KPCDSTQS-SKSHCSESNMSCEVDTVD 1563 >AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical protein F59D6.2 protein. Length = 380 Score = 30.7 bits (66), Expect = 1.1 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 7/114 (6%) Frame = +3 Query: 126 RTSTEMPQ--KSYCVVFILFALAIVQAVG--YDTE---LTKPCDSTACFDELHGSLGDCS 284 +T T +P SY V L IV A G YD T PC STA +L ++G S Sbjct: 256 QTDTAIPDTTSSYTGVPNLVLAEIVIATGAQYDWNHQAYTLPCSSTATLPDLVFTIGGNS 315 Query: 285 CKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHI 446 V +++ N+ + P Q ++ + P W YCHI Sbjct: 316 YNVRAVEYVVNLNL-PNGQCALS-----LFGTFSSPSGPLWVFGDNFLRSYCHI 363 >Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical protein C05D12.2 protein. Length = 1052 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +3 Query: 498 EYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEI 629 +Y E Y K A + +D+D L+Y+ +TI ++Q EI Sbjct: 293 QYFPENVQVGYGKTADEQLNTYVDNDGDLAYILLTIRPSSQAEI 336 >AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor NHR-114 protein. Length = 339 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = +3 Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563 RCA +YC + C + N + + T T+ K + SDC SD Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114 >AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor NHR-114 protein. Length = 409 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = +3 Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563 RCA +YC + C + N + + T T+ K + SDC SD Sbjct: 55 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 105 >AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor NHR-114 protein. Length = 304 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = +3 Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563 RCA +YC + C + N + + T T+ K + SDC SD Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114 >AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor protein protein. Length = 418 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = +3 Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563 RCA +YC + C + N + + T T+ K + SDC SD Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114 >AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical protein F59D6.3 protein. Length = 474 Score = 29.5 bits (63), Expect = 2.5 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 7/119 (5%) Frame = +3 Query: 111 THVMARTSTEMPQKS--YCVVFILFALAIVQAVG--YDTE---LTKPCDSTACFDELHGS 269 T+ +T T +P S + V + IV+A G YD T PC STA ++ + Sbjct: 345 TYSRTQTETTIPDTSSGWTGVPNVVLAGIVKATGATYDWNHQAYTLPCSSTATLPDMVFT 404 Query: 270 LGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHI 446 +G S V +++ N+ + P Q ++ + + P W YCH+ Sbjct: 405 IGGNSYNVRAVEYVVNLNL-PNGQCALS-----LFGTAASQSGPAWILGDNFLRSYCHV 457 >AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone receptor familyprotein 114, isoform b protein. Length = 304 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = +3 Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563 RCA +YC + C + N + + T T+ K + SDC SD Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114 >AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone receptor familyprotein 114, isoform a protein. Length = 418 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = +3 Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563 RCA +YC + C + N + + T T+ K + SDC SD Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114 >Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical protein F53B6.6 protein. Length = 610 Score = 27.9 bits (59), Expect = 7.5 Identities = 16/74 (21%), Positives = 31/74 (41%) Frame = +3 Query: 417 SRCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLN 596 ++ K H+ C +++ Y ++ Y D+ K+ C +D PQ+ Y + Sbjct: 224 AQVGQKVTHVWRCDQDASHVYGILIHSCYADDGHGNKFELVDDRGCSTDPFLLPQIEYEH 283 Query: 597 MTISAANQYEIAKW 638 ISA + K+ Sbjct: 284 GAISAYTNAHVFKY 297 >Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical protein F25D7.4 protein. Length = 932 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 513 TPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAAN 617 +P+T S + ++D SDLD Q SY ++T +A+ Sbjct: 11 SPSTGRSNKEETDITSDLDPRRQRSYSDLTAFSAS 45 >Z49907-4|CAA90086.1| 454|Caenorhabditis elegans Hypothetical protein B0491.4 protein. Length = 454 Score = 27.5 bits (58), Expect = 9.9 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = +3 Query: 267 SLGDCSCKVDTIDFFNNVKIFPRIQ----SIVTKDYFRF 371 S G CS VD +D +++ I+ RIQ + T DY +F Sbjct: 139 SEGGCSYSVDDVDIYDDGTIYARIQFKYLASCTVDYRKF 177 >AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical protein F37C4.2 protein. Length = 686 Score = 27.5 bits (58), Expect = 9.9 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -1 Query: 499 SLLYPVS*PGTLSFVQVF--IWQYFI 428 SL+Y S PGT++F VF IWQ+ I Sbjct: 181 SLVYFYSVPGTVAFNSVFARIWQFMI 206 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,697,422 Number of Sequences: 27780 Number of extensions: 332394 Number of successful extensions: 1100 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1053 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1099 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1645110168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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