Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30849
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132877-13|CAC70110.4| 478|Caenorhabditis elegans Hypothetical... 97 1e-20
AL132877-14|CAD92388.1| 439|Caenorhabditis elegans Hypothetical... 37 0.012
AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical ... 33 0.15
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical ... 31 1.1
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr... 30 1.4
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 29 2.5
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 29 2.5
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 29 2.5
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 29 2.5
AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical ... 29 2.5
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 29 2.5
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 29 2.5
Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z49907-4|CAA90086.1| 454|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical ... 27 9.9
>AL132877-13|CAC70110.4| 478|Caenorhabditis elegans Hypothetical
protein Y105E8B.8a protein.
Length = 478
Score = 96.7 bits (230), Expect = 1e-20
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 2/152 (1%)
Frame = +3
Query: 246 CFDELHGSLGDCSC-KVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSR 422
CF + ++ C C K TID NN +I+ ++Q ++ KD+FRFYKVN+ K CPFWADD +
Sbjct: 28 CFCKGFEAVEPCDCSKPQTIDKLNNHRIYEKVQKLLKKDFFRFYKVNMDKTCPFWADDRQ 87
Query: 423 CAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMT 602
C C I C E VP G A +E D + D + ++ T
Sbjct: 88 CGTNQCGIAFCDDE-VP---AGLRRRNAVNMEAAAVKEEEDDDAEKCADAGNNIDPMDRT 143
Query: 603 ISAANQYEIAKWKVHDDA-HDNFCESDDRDAD 695
+ + ++ HDD D FCE +D ++D
Sbjct: 144 LHDDEKRQLDAMDHHDDGLEDKFCEIEDDESD 175
>AL132877-14|CAD92388.1| 439|Caenorhabditis elegans Hypothetical
protein Y105E8B.8b protein.
Length = 439
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 384 LKKECPFWADDSRCAMKYCHIKTCTKESVPG 476
+ K CPFWADD +C C I C E G
Sbjct: 1 MDKTCPFWADDRQCGTNQCGIAFCDDEVPAG 31
>AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical
protein F37C4.3 protein.
Length = 685
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = -1
Query: 535 LEYLVAGVSSTYSLLYPVS*PGTLSFVQVF--IWQYFI---AHLLSSAQNGHSFFKL 380
L+Y GV SL+Y S PGT++F VF IWQ+ I +LL S++ + +++
Sbjct: 168 LQYGYYGVIGLISLVYFYSVPGTVAFNSVFARIWQFMIGMVVYLLGSSKPTYPHYRV 224
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 225 KPCDSTACFDELHGSLGDCSCKVDTID 305
KPCDST + H S + SC+VDT+D
Sbjct: 1538 KPCDSTQS-SKSHCSESNMSCEVDTVD 1563
>AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical
protein F59D6.2 protein.
Length = 380
Score = 30.7 bits (66), Expect = 1.1
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Frame = +3
Query: 126 RTSTEMPQ--KSYCVVFILFALAIVQAVG--YDTE---LTKPCDSTACFDELHGSLGDCS 284
+T T +P SY V L IV A G YD T PC STA +L ++G S
Sbjct: 256 QTDTAIPDTTSSYTGVPNLVLAEIVIATGAQYDWNHQAYTLPCSSTATLPDLVFTIGGNS 315
Query: 285 CKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHI 446
V +++ N+ + P Q ++ + P W YCHI
Sbjct: 316 YNVRAVEYVVNLNL-PNGQCALS-----LFGTFSSPSGPLWVFGDNFLRSYCHI 363
>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
protein C05D12.2 protein.
Length = 1052
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 498 EYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEI 629
+Y E Y K A + +D+D L+Y+ +TI ++Q EI
Sbjct: 293 QYFPENVQVGYGKTADEQLNTYVDNDGDLAYILLTIRPSSQAEI 336
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
RCA +YC + C + N + + T T+ K + SDC SD
Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
RCA +YC + C + N + + T T+ K + SDC SD
Sbjct: 55 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 105
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
RCA +YC + C + N + + T T+ K + SDC SD
Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
RCA +YC + C + N + + T T+ K + SDC SD
Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114
>AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical
protein F59D6.3 protein.
Length = 474
Score = 29.5 bits (63), Expect = 2.5
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +3
Query: 111 THVMARTSTEMPQKS--YCVVFILFALAIVQAVG--YDTE---LTKPCDSTACFDELHGS 269
T+ +T T +P S + V + IV+A G YD T PC STA ++ +
Sbjct: 345 TYSRTQTETTIPDTSSGWTGVPNVVLAGIVKATGATYDWNHQAYTLPCSSTATLPDMVFT 404
Query: 270 LGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHI 446
+G S V +++ N+ + P Q ++ + + P W YCH+
Sbjct: 405 IGGNSYNVRAVEYVVNLNL-PNGQCALS-----LFGTAASQSGPAWILGDNFLRSYCHV 457
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
RCA +YC + C + N + + T T+ K + SDC SD
Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 420 RCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSK---EAQSDCKSD 563
RCA +YC + C + N + + T T+ K + SDC SD
Sbjct: 64 RCACRYCRFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSD 114
>Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical
protein F53B6.6 protein.
Length = 610
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +3
Query: 417 SRCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLN 596
++ K H+ C +++ Y ++ Y D+ K+ C +D PQ+ Y +
Sbjct: 224 AQVGQKVTHVWRCDQDASHVYGILIHSCYADDGHGNKFELVDDRGCSTDPFLLPQIEYEH 283
Query: 597 MTISAANQYEIAKW 638
ISA + K+
Sbjct: 284 GAISAYTNAHVFKY 297
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 513 TPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAAN 617
+P+T S + ++D SDLD Q SY ++T +A+
Sbjct: 11 SPSTGRSNKEETDITSDLDPRRQRSYSDLTAFSAS 45
>Z49907-4|CAA90086.1| 454|Caenorhabditis elegans Hypothetical
protein B0491.4 protein.
Length = 454
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +3
Query: 267 SLGDCSCKVDTIDFFNNVKIFPRIQ----SIVTKDYFRF 371
S G CS VD +D +++ I+ RIQ + T DY +F
Sbjct: 139 SEGGCSYSVDDVDIYDDGTIYARIQFKYLASCTVDYRKF 177
>AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical
protein F37C4.2 protein.
Length = 686
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -1
Query: 499 SLLYPVS*PGTLSFVQVF--IWQYFI 428
SL+Y S PGT++F VF IWQ+ I
Sbjct: 181 SLVYFYSVPGTVAFNSVFARIWQFMI 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,697,422
Number of Sequences: 27780
Number of extensions: 332394
Number of successful extensions: 1100
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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