Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30849
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 90   SFRANIYDCYVC 55
            S R  +YDCYVC
Sbjct: 1060 SDRERLYDCYVC 1071


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/31 (19%), Positives = 16/31 (51%)
 Frame = +1

Query: 58  YITVVYVRSEATFVSAIILMSWRGHPQRCHR 150
           Y+   ++ +  + +  +I+++W     R HR
Sbjct: 299 YLLFTFIMNTVSILVTVIIINWNFRGPRTHR 329


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +3

Query: 504 VDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWK 641
           +D+    K+ KEAQ   K    +   L  L          +IA WK
Sbjct: 34  IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWK 79


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 277 SPKDPWSSSKQAVLSQGFVSSVS*PTACTI-ARANKINTT 161
           SP+ P S+S+ +V  +    SVS P+  T+  + N +  T
Sbjct: 322 SPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERT 361


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +3

Query: 504 VDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWK 641
           +D+    K+ KEAQ   K    +   L  L          +IA WK
Sbjct: 34  IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWK 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,402
Number of Sequences: 438
Number of extensions: 4329
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)