Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30849
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1 (... 72 3e-13
At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1 (... 64 1e-10
At2g38960.1 68415.m04788 endoplasmic reticulum oxidoreductin 1 (... 64 1e-10
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa... 31 0.75
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ... 31 0.75
At2g39850.1 68415.m04894 subtilase family protein contains simil... 31 0.99
At4g30520.1 68417.m04333 leucine-rich repeat family protein / pr... 28 5.3
At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) iden... 28 5.3
At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) iden... 28 5.3
At3g59200.1 68416.m06600 F-box family protein contains F-box dom... 28 7.0
At1g59980.1 68414.m06757 DNAJ heat shock N-terminal domain-conta... 27 9.2
At1g14170.1 68414.m01675 KH domain-containing protein location o... 27 9.2
>At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1
(ERO1) family protein contains Pfam domain, PF04137:
Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Length = 469
Score = 72.1 bits (169), Expect = 3e-13
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Frame = +3
Query: 126 RTSTEMPQKSYCVVFILFALA--IVQAVGYDTELTKPCD-STACFDELHGSLGDCSCKVD 296
R + P + VVF+ A++ VG+ C S + G + DC C +
Sbjct: 15 RKTWRWPLATLVVVFLAVAVSSRTNSNVGFFFSDRNSCSCSLQKTGKYKGMIEDCCCDYE 74
Query: 297 TIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHIKTCTKESVP 473
T+D N + P +Q +VT +FR+YKV L +CPFW DD C ++ C + C + P
Sbjct: 75 TVDNLNTEVLNPLLQDLVTTPFFRYYKVKLWCDCPFWPDDGMCRLRDCSVCECPENEFP 133
>At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1
(ERO1) family protein contains Pfam domain, PF04137:
Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Length = 478
Score = 63.7 bits (148), Expect = 1e-10
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +3
Query: 264 GSLGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCH 443
G + DC C +T++ N + P +Q +V ++R++KV L +CPFW DD C ++ C
Sbjct: 67 GIVEDCCCDYETVNRLNTEVLNPLLQDLVKTPFYRYFKVKLWCDCPFWPDDGMCRLRDCS 126
Query: 444 IKTCTKESVP 473
+ C + P
Sbjct: 127 VCECPESEFP 136
>At2g38960.1 68415.m04788 endoplasmic reticulum oxidoreductin 1
(ERO1) family protein contains Pfam domain, PF04137:
Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Length = 472
Score = 63.7 bits (148), Expect = 1e-10
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +3
Query: 264 GSLGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCH 443
G + DC C +T++ N + P +Q +V ++R++KV L +CPFW DD C ++ C
Sbjct: 67 GIVEDCCCDYETVNRLNTEVLNPLLQDLVKTPFYRYFKVKLWCDCPFWPDDGMCRLRDCS 126
Query: 444 IKTCTKESVP 473
+ C + P
Sbjct: 127 VCECPESEFP 136
>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 663
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -2
Query: 279 SPPRTRGAHRSRL-YCRKASLAP 214
SPPRTRG R R+ YC +A++ P
Sbjct: 569 SPPRTRGGKRGRVYYCTQAAIRP 591
>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1006
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 462 ESVPGYE-TGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQY 623
++ GY+ T YNN+ P+T YS + + + + Y N T AAN +
Sbjct: 179 QTAGGYQSTNYNNQTAGSYPSTNYSNQTPASNQGNYTDYTSNPYQNYTPDAANTH 233
>At2g39850.1 68415.m04894 subtilase family protein contains
similarity to subtilisin-like protease C1 GI:13325079
from [Glycine max]
Length = 774
Score = 30.7 bits (66), Expect = 0.99
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Frame = +3
Query: 411 DDSRCAMKYCHIKTCTKESVPG--YETGYNNEYVDETPATKYSKEA--------QSDC-K 557
DD+ A H+ TK PG YET Y +Y+D Y+ E + DC K
Sbjct: 588 DDNEFAYGSGHLNA-TKVRDPGLVYETHYQ-DYIDYLCKLGYNTEKLRSHVGSDKIDCSK 645
Query: 558 SDLDHDPQLSYLNMT 602
+++DHD L+Y MT
Sbjct: 646 TEIDHDADLNYPTMT 660
>At4g30520.1 68417.m04333 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 648
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 522 WQAFHLHTHYYIQFHSQVHFPSCKSL-YGSIS-LHTYCHQP 406
W A H H+H+Y H+ + F + SL S+S L +C+ P
Sbjct: 581 WAASHNHSHFY---HANISFKTISSLSTTSVSRLDAHCNDP 618
>At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 816
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -3
Query: 614 GSTNGHIQIAQLRIVIQIRLTVGL 543
GS N + QIAQLRIV++ + +VG+
Sbjct: 393 GSINDYNQIAQLRIVVKPKPSVGV 416
>At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 883
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -3
Query: 614 GSTNGHIQIAQLRIVIQIRLTVGL 543
GS N + QIAQLRIV++ + +VG+
Sbjct: 393 GSINDYNQIAQLRIVVKPKPSVGV 416
>At3g59200.1 68416.m06600 F-box family protein contains F-box domain
Pfam:PF00646
Length = 520
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 522 TKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWKVHDDAHDNFCESDDRDADAD 701
T + +E + KS P L YL + + A++Y + +AH ++D+ DAD
Sbjct: 217 TFFCEETYENPKSVSFDTPNLVYLEYSDAIASKYPKVNFNSLVEAHIGLRLTEDQSGDAD 276
Query: 702 Y 704
+
Sbjct: 277 F 277
>At1g59980.1 68414.m06757 DNAJ heat shock N-terminal
domain-containing protein similar to Altered Response to
Gravity [Arabidopsis thaliana] GI:4249662; contains Pfam
profile PF00226 DnaJ domain
Length = 414
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 309 RSQLCRLYRSSPPRTRGAHRSRLYCRKAS 223
R+++C Y PP +G+ +SR + +K S
Sbjct: 349 RNEICAAYTIFPPTKQGSSKSRSWSKKKS 377
>At1g14170.1 68414.m01675 KH domain-containing protein location of
EST 219C14T7 , gb|N38506
Length = 454
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 89 LLSLVL*YSCHGADIHRDATEKLLCCVYFICSSDSTGGWLRHG 217
L+S L S + RD + CV FIC +++ GG + G
Sbjct: 220 LMSAALTSSHRNYAVRRDIADAREFCVCFICPAENVGGVIGKG 262
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,363
Number of Sequences: 28952
Number of extensions: 297309
Number of successful extensions: 820
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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