BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30849 (709 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1 (... 72 3e-13 At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1 (... 64 1e-10 At2g38960.1 68415.m04788 endoplasmic reticulum oxidoreductin 1 (... 64 1e-10 At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa... 31 0.75 At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ... 31 0.75 At2g39850.1 68415.m04894 subtilase family protein contains simil... 31 0.99 At4g30520.1 68417.m04333 leucine-rich repeat family protein / pr... 28 5.3 At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) iden... 28 5.3 At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) iden... 28 5.3 At3g59200.1 68416.m06600 F-box family protein contains F-box dom... 28 7.0 At1g59980.1 68414.m06757 DNAJ heat shock N-terminal domain-conta... 27 9.2 At1g14170.1 68414.m01675 KH domain-containing protein location o... 27 9.2 >At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1 (ERO1) family protein contains Pfam domain, PF04137: Endoplasmic Reticulum Oxidoreductin 1 (ERO1) Length = 469 Score = 72.1 bits (169), Expect = 3e-13 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Frame = +3 Query: 126 RTSTEMPQKSYCVVFILFALA--IVQAVGYDTELTKPCD-STACFDELHGSLGDCSCKVD 296 R + P + VVF+ A++ VG+ C S + G + DC C + Sbjct: 15 RKTWRWPLATLVVVFLAVAVSSRTNSNVGFFFSDRNSCSCSLQKTGKYKGMIEDCCCDYE 74 Query: 297 TIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHIKTCTKESVP 473 T+D N + P +Q +VT +FR+YKV L +CPFW DD C ++ C + C + P Sbjct: 75 TVDNLNTEVLNPLLQDLVTTPFFRYYKVKLWCDCPFWPDDGMCRLRDCSVCECPENEFP 133 >At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1 (ERO1) family protein contains Pfam domain, PF04137: Endoplasmic Reticulum Oxidoreductin 1 (ERO1) Length = 478 Score = 63.7 bits (148), Expect = 1e-10 Identities = 23/70 (32%), Positives = 39/70 (55%) Frame = +3 Query: 264 GSLGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCH 443 G + DC C +T++ N + P +Q +V ++R++KV L +CPFW DD C ++ C Sbjct: 67 GIVEDCCCDYETVNRLNTEVLNPLLQDLVKTPFYRYFKVKLWCDCPFWPDDGMCRLRDCS 126 Query: 444 IKTCTKESVP 473 + C + P Sbjct: 127 VCECPESEFP 136 >At2g38960.1 68415.m04788 endoplasmic reticulum oxidoreductin 1 (ERO1) family protein contains Pfam domain, PF04137: Endoplasmic Reticulum Oxidoreductin 1 (ERO1) Length = 472 Score = 63.7 bits (148), Expect = 1e-10 Identities = 23/70 (32%), Positives = 39/70 (55%) Frame = +3 Query: 264 GSLGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCH 443 G + DC C +T++ N + P +Q +V ++R++KV L +CPFW DD C ++ C Sbjct: 67 GIVEDCCCDYETVNRLNTEVLNPLLQDLVKTPFYRYFKVKLWCDCPFWPDDGMCRLRDCS 126 Query: 444 IKTCTKESVP 473 + C + P Sbjct: 127 VCECPESEFP 136 >At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam domain, PF01926: GTPase of unknown function Length = 663 Score = 31.1 bits (67), Expect = 0.75 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -2 Query: 279 SPPRTRGAHRSRL-YCRKASLAP 214 SPPRTRG R R+ YC +A++ P Sbjct: 569 SPPRTRGGKRGRVYYCTQAAIRP 591 >At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam profile: PF03399 SAC3/GANP family Length = 1006 Score = 31.1 bits (67), Expect = 0.75 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +3 Query: 462 ESVPGYE-TGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQY 623 ++ GY+ T YNN+ P+T YS + + + + Y N T AAN + Sbjct: 179 QTAGGYQSTNYNNQTAGSYPSTNYSNQTPASNQGNYTDYTSNPYQNYTPDAANTH 233 >At2g39850.1 68415.m04894 subtilase family protein contains similarity to subtilisin-like protease C1 GI:13325079 from [Glycine max] Length = 774 Score = 30.7 bits (66), Expect = 0.99 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%) Frame = +3 Query: 411 DDSRCAMKYCHIKTCTKESVPG--YETGYNNEYVDETPATKYSKEA--------QSDC-K 557 DD+ A H+ TK PG YET Y +Y+D Y+ E + DC K Sbjct: 588 DDNEFAYGSGHLNA-TKVRDPGLVYETHYQ-DYIDYLCKLGYNTEKLRSHVGSDKIDCSK 645 Query: 558 SDLDHDPQLSYLNMT 602 +++DHD L+Y MT Sbjct: 646 TEIDHDADLNYPTMT 660 >At4g30520.1 68417.m04333 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 648 Score = 28.3 bits (60), Expect = 5.3 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = -2 Query: 522 WQAFHLHTHYYIQFHSQVHFPSCKSL-YGSIS-LHTYCHQP 406 W A H H+H+Y H+ + F + SL S+S L +C+ P Sbjct: 581 WAASHNHSHFY---HANISFKTISSLSTTSVSRLDAHCNDP 618 >At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) identical to RSH1 (RelA/SpoT homolog) [Arabidopsis thaliana] GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins Length = 816 Score = 28.3 bits (60), Expect = 5.3 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -3 Query: 614 GSTNGHIQIAQLRIVIQIRLTVGL 543 GS N + QIAQLRIV++ + +VG+ Sbjct: 393 GSINDYNQIAQLRIVVKPKPSVGV 416 >At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) identical to RSH1 (RelA/SpoT homolog) [Arabidopsis thaliana] GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins Length = 883 Score = 28.3 bits (60), Expect = 5.3 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = -3 Query: 614 GSTNGHIQIAQLRIVIQIRLTVGL 543 GS N + QIAQLRIV++ + +VG+ Sbjct: 393 GSINDYNQIAQLRIVVKPKPSVGV 416 >At3g59200.1 68416.m06600 F-box family protein contains F-box domain Pfam:PF00646 Length = 520 Score = 27.9 bits (59), Expect = 7.0 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = +3 Query: 522 TKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWKVHDDAHDNFCESDDRDADAD 701 T + +E + KS P L YL + + A++Y + +AH ++D+ DAD Sbjct: 217 TFFCEETYENPKSVSFDTPNLVYLEYSDAIASKYPKVNFNSLVEAHIGLRLTEDQSGDAD 276 Query: 702 Y 704 + Sbjct: 277 F 277 >At1g59980.1 68414.m06757 DNAJ heat shock N-terminal domain-containing protein similar to Altered Response to Gravity [Arabidopsis thaliana] GI:4249662; contains Pfam profile PF00226 DnaJ domain Length = 414 Score = 27.5 bits (58), Expect = 9.2 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -2 Query: 309 RSQLCRLYRSSPPRTRGAHRSRLYCRKAS 223 R+++C Y PP +G+ +SR + +K S Sbjct: 349 RNEICAAYTIFPPTKQGSSKSRSWSKKKS 377 >At1g14170.1 68414.m01675 KH domain-containing protein location of EST 219C14T7 , gb|N38506 Length = 454 Score = 27.5 bits (58), Expect = 9.2 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +2 Query: 89 LLSLVL*YSCHGADIHRDATEKLLCCVYFICSSDSTGGWLRHG 217 L+S L S + RD + CV FIC +++ GG + G Sbjct: 220 LMSAALTSSHRNYAVRRDIADAREFCVCFICPAENVGGVIGKG 262 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,485,363 Number of Sequences: 28952 Number of extensions: 297309 Number of successful extensions: 820 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 820 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1526202912 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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