Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30848
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine re...    29   3.5  
Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC199172-4|ABO33272.1|  304|Caenorhabditis elegans F-box a prote...    28   6.2  

>AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein25 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 414 IGIYGTYTKMTLTIFFCLFVCLFRL 488
           I +Y   + +TL I+F +F CLFRL
Sbjct: 14  ITVYYITSAITLPIYFLVFTCLFRL 38


>Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical
           protein C44H4.4 protein.
          Length = 745

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 501 PFQRLAGTNRQTDRKKLSMSFWCMYRIYLYYHMHVVK 391
           PF + AG +   D   +S ++   Y     YH+HV K
Sbjct: 285 PFMKAAGNSATADASTISSAYNIFYFDQTSYHLHVKK 321


>Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical
           protein T20G5.4 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 586 VPPRSEASLSYSLYHQLPIRESPVKIGPAIPEVSRNKQTNRQKKIVNVILVYV 428
           VP  SEAS     YHQ     + +KIG ++ +V    +  R+  IV   +V V
Sbjct: 342 VPLYSEASAHEKRYHQRQGSLAHIKIGRSVSQVRMVPRDGRRASIVKERIVNV 394


>AC199172-4|ABO33272.1|  304|Caenorhabditis elegans F-box a protein
           protein 29 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 328 VKKSIHINKIGVSLCNIILSAFY 396
           + +++H NKI + LCN  +S ++
Sbjct: 42  IDENVHFNKISIELCNCYVSIYF 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,117,675
Number of Sequences: 27780
Number of extensions: 311517
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)