Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30846
(635 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O75251 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 261 9e-69
UniRef50_Q9DC70 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 259 5e-68
UniRef50_O68853 Cluster: NADH-quinone oxidoreductase subunit B 1... 220 3e-56
UniRef50_A6R2Y3 Cluster: NADH-ubiquinone oxidoreductase 20 kDa s... 207 2e-52
UniRef50_O67334 Cluster: NADH-quinone oxidoreductase chain B; n=... 198 1e-49
UniRef50_P56897 Cluster: NADH-quinone oxidoreductase subunit B 2... 180 3e-44
UniRef50_Q8A0F5 Cluster: NADH dehydrogenase I, chain B; n=6; Bac... 177 1e-43
UniRef50_Q26783 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 174 1e-42
UniRef50_A5UXK1 Cluster: NADH-quinone oxidoreductase, B subunit;... 171 9e-42
UniRef50_Q1IL91 Cluster: NADH-quinone oxidoreductase, B subunit;... 171 2e-41
UniRef50_Q3ZXS0 Cluster: Proton-translocating NADH-quinone oxido... 169 5e-41
UniRef50_Q1IPE7 Cluster: NADH-quinone oxidoreductase, B subunit;... 167 3e-40
UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 165 6e-40
UniRef50_Q8KEC2 Cluster: NADH dehydrogenase I, 20 kDa subunit; n... 165 8e-40
UniRef50_Q9F2W1 Cluster: NADH dehydrogenase subunit NuoB2; n=5; ... 162 6e-39
UniRef50_Q1K3R2 Cluster: NADH-quinone oxidoreductase, B subunit;... 162 7e-39
UniRef50_Q608X8 Cluster: NADH dehydrogenase I, B subunit; n=7; B... 160 2e-38
UniRef50_P65576 Cluster: NADH-quinone oxidoreductase subunit B; ... 159 7e-38
UniRef50_Q9P9G2 Cluster: F420H2 dehydrogenase subunit FpoB; n=6;... 158 9e-38
UniRef50_Q6MIR4 Cluster: NADH dehydrogenase I chain B; n=2; Delt... 157 2e-37
UniRef50_A5GIB4 Cluster: NAD(P)H-quinone oxidoreductase subunit ... 155 1e-36
UniRef50_Q44240 Cluster: NAD(P)H-quinone oxidoreductase subunit ... 153 4e-36
UniRef50_Q9HRM0 Cluster: NADH dehydrogenase/oxidoreductase; n=6;... 152 6e-36
UniRef50_Q67KN6 Cluster: NADH dehydrogenase I subunit B; n=5; Ba... 151 1e-35
UniRef50_P19050 Cluster: NAD(P)H-quinone oxidoreductase subunit ... 151 1e-35
UniRef50_Q9I0K0 Cluster: NADH-quinone oxidoreductase subunit B; ... 151 2e-35
UniRef50_A3PKI1 Cluster: NADH-quinone oxidoreductase, B subunit;... 149 4e-35
UniRef50_A0RY66 Cluster: NADH-ubiquinone oxidoreductase, subunit... 149 7e-35
UniRef50_Q2S5J2 Cluster: NADH-quinone oxidoreductase chain b; n=... 146 5e-34
UniRef50_A4J659 Cluster: NADH-quinone oxidoreductase, B subunit;... 142 5e-33
UniRef50_Q8F7Q0 Cluster: NADH dehydrogenase I chain B; n=7; Bact... 142 8e-33
UniRef50_A7H9V3 Cluster: NADH-quinone oxidoreductase, B subunit;... 138 1e-31
UniRef50_A2ZXB2 Cluster: Putative uncharacterized protein; n=2; ... 134 2e-30
UniRef50_Q8ZU66 Cluster: NADH-ubiquinone oxidoreductase subunit;... 132 7e-30
UniRef50_Q4J8C7 Cluster: NADH:ubiquinone oxidoreductase, B subun... 126 4e-28
UniRef50_O28446 Cluster: F420H2:quinone oxidoreductase, 39.7 kDa... 123 4e-27
UniRef50_A3H7K7 Cluster: NADH-quinone oxidoreductase, B subunit;... 123 4e-27
UniRef50_Q9YC23 Cluster: NuoB homolog; n=1; Aeropyrum pernix|Rep... 121 2e-26
UniRef50_A0L9R6 Cluster: NADH-quinone oxidoreductase, B subunit;... 120 2e-26
UniRef50_A3DKH2 Cluster: NADH-quinone oxidoreductase, B subunit;... 111 1e-23
UniRef50_Q2H7B9 Cluster: Putative uncharacterized protein; n=1; ... 110 3e-23
UniRef50_Q9V0R6 Cluster: NADH ubiquinone oxidoreductase subunit;... 109 5e-23
UniRef50_A6Q8J4 Cluster: NADH-quinone oxidoreductase, chain B; n... 107 2e-22
UniRef50_Q9V0S7 Cluster: NuoB NADH dehydrogenase I, subunit B; n... 106 5e-22
UniRef50_A1ALK4 Cluster: NADH-quinone oxidoreductase, B subunit;... 104 2e-21
UniRef50_A6DBV2 Cluster: NADH:ubiquinone oxidoreductase 20 kD su... 102 8e-21
UniRef50_UPI00015BB165 Cluster: NADH-quinone oxidoreductase, B s... 99 4e-20
UniRef50_Q9X0U1 Cluster: NADH dehydrogenase, putative; n=4; Ther... 99 8e-20
UniRef50_A3DM92 Cluster: NADH-quinone oxidoreductase, B subunit;... 98 1e-19
UniRef50_Q89GK1 Cluster: HycG protein; n=14; Proteobacteria|Rep:... 97 2e-19
UniRef50_Q609U0 Cluster: Hydrogenase subunit; n=2; Proteobacteri... 97 3e-19
UniRef50_A0UXP2 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 97 3e-19
UniRef50_Q0W3I3 Cluster: Ech hydrogenase, subunit C; n=6; cellul... 96 5e-19
UniRef50_A1RWL1 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 96 7e-19
UniRef50_Q8PY02 Cluster: Formate hydrogenlyase subunit 7; n=3; M... 95 2e-18
UniRef50_Q0W2C0 Cluster: Hydrogenase, small subunit-like protein... 95 2e-18
UniRef50_Q7M874 Cluster: HYDROGENASE-Ni,Fe-hydrogenase III small... 93 5e-18
UniRef50_A1ASR2 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 93 5e-18
UniRef50_P16433 Cluster: Formate hydrogenlyase subunit 7; n=57; ... 93 5e-18
UniRef50_Q57936 Cluster: Uncharacterized protein MJ0516; n=15; E... 92 9e-18
UniRef50_A7CX02 Cluster: NADH ubiquinone oxidoreductase 20 kDa s... 92 1e-17
UniRef50_UPI0000E81815 Cluster: PREDICTED: hypothetical protein;... 91 2e-17
UniRef50_A5FR05 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 91 2e-17
UniRef50_Q0W6T1 Cluster: [NiFe]-hydrogenase, small subunit; n=1;... 91 3e-17
UniRef50_A5FPI3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 90 5e-17
UniRef50_A6Q6W5 Cluster: Ni-Fe hydrogenase, small subunit HycG; ... 89 6e-17
UniRef50_Q7WT80 Cluster: EchC; n=2; Deltaproteobacteria|Rep: Ech... 89 8e-17
UniRef50_Q9UYN6 Cluster: Hydrogenase 4, component I or formate h... 89 8e-17
UniRef50_A7BSF1 Cluster: NADH-plastoquinone oxidoreductase subun... 87 3e-16
UniRef50_Q58758 Cluster: Uncharacterized protein MJ1363; n=9; Eu... 87 3e-16
UniRef50_P72317 Cluster: CooL; n=8; Bacteria|Rep: CooL - Rhodosp... 86 8e-16
UniRef50_A5FW47 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 85 1e-15
UniRef50_A6DB47 Cluster: HYDROGENASE-Ni,Fe-hydrogenase III small... 85 2e-15
UniRef50_Q12F15 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 83 4e-15
UniRef50_Q24ST9 Cluster: Formate hydrogenlyase subunit 7; n=2; D... 80 4e-14
UniRef50_A2YHL1 Cluster: Putative uncharacterized protein; n=2; ... 78 2e-13
UniRef50_A4YGN5 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 78 2e-13
UniRef50_A7HGW9 Cluster: NADH ubiquinone oxidoreductase 20 kDa s... 77 3e-13
UniRef50_A1SQ82 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 77 3e-13
UniRef50_Q21TB3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 75 1e-12
UniRef50_Q978D5 Cluster: Formate hydrogenlyase subunit 2; n=2; T... 70 4e-11
UniRef50_A5FW77 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 65 2e-09
UniRef50_Q0BPG7 Cluster: Formate hydrogenlyase subunit 7; n=1; G... 63 5e-09
UniRef50_A6DAC3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 61 3e-08
UniRef50_A3ETD3 Cluster: Ni,Fe-hydrogenase III small subunit; n=... 60 4e-08
UniRef50_UPI00015BC86C Cluster: UPI00015BC86C related cluster; n... 59 8e-08
UniRef50_Q6L0U2 Cluster: Formate hydrogenlyase subunit 7; n=3; c... 59 8e-08
UniRef50_A0LSU0 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 51 2e-05
UniRef50_Q5FU78 Cluster: Putative uncharacterized protein; n=1; ... 51 3e-05
UniRef50_A2XI26 Cluster: Putative uncharacterized protein; n=3; ... 46 6e-04
UniRef50_Q6A6I9 Cluster: NADH dehydrogenase subunit; n=1; Propio... 43 0.007
UniRef50_A7QEP9 Cluster: Chromosome chr16 scaffold_86, whole gen... 38 0.27
UniRef50_Q6XQK2 Cluster: HoxY; n=5; Proteobacteria|Rep: HoxY - T... 37 0.47
UniRef50_Q44515 Cluster: Hydrogenase small subunit; n=31; Bacter... 36 1.1
UniRef50_A0LLU1 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 36 1.1
UniRef50_Q59113 Cluster: Hydrogenase small beta subunit; n=1; Ac... 35 1.4
UniRef50_Q0FXV5 Cluster: Putative uncharacterized protein; n=1; ... 35 1.9
UniRef50_Q85WY3 Cluster: ORF82a; n=1; Pinus koraiensis|Rep: ORF8... 34 2.5
UniRef50_Q8ZL73 Cluster: Putative cytoplasmic protein; n=10; cel... 33 4.4
UniRef50_A5UWN9 Cluster: NADH ubiquinone oxidoreductase, 20 kDa ... 33 5.8
UniRef50_Q7NHB5 Cluster: Magnesium protoporphyrin IX chelatase s... 33 7.6
UniRef50_A5Z5F5 Cluster: Putative uncharacterized protein; n=1; ... 33 7.6
>UniRef50_O75251 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor; n=9;
Catarrhini|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor - Homo
sapiens (Human)
Length = 213
Score = 261 bits (640), Expect = 9e-69
Identities = 116/147 (78%), Positives = 130/147 (88%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 454
+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQSDVMIVAGT
Sbjct: 66 KLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGT 125
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
LTNKMAPALRKVYDQMP+PR+V+SMGSCAN GCDRIVPVDIY+PGCPP
Sbjct: 126 LTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPP 185
Query: 273 TAEALLYGVLQLQKKIKRMKTIQVWYR 193
TAEALLYG+LQLQ+KIKR + +Q+WYR
Sbjct: 186 TAEALLYGILQLQRKIKRERRLQIWYR 212
>UniRef50_Q9DC70 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor; n=117;
cellular organisms|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor - Mus
musculus (Mouse)
Length = 224
Score = 259 bits (634), Expect = 5e-68
Identities = 115/147 (78%), Positives = 130/147 (88%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 454
+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ+DVMIVAGT
Sbjct: 77 KLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGT 136
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
LTNKMAPALRKVYDQMP+PR+V+SMGSCAN GCDRIVPVDIYVPGCPP
Sbjct: 137 LTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 196
Query: 273 TAEALLYGVLQLQKKIKRMKTIQVWYR 193
TAEALLYG+LQLQ+KIKR + +++WYR
Sbjct: 197 TAEALLYGILQLQRKIKREQKLKIWYR 223
>UniRef50_O68853 Cluster: NADH-quinone oxidoreductase subunit B 1;
n=215; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit B 1 - Rhizobium meliloti
(Sinorhizobium meliloti)
Length = 192
Score = 220 bits (537), Expect = 3e-56
Identities = 104/141 (73%), Positives = 115/141 (81%)
Frame = -3
Query: 627 DDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLT 448
D+L+NW R GSL MTFGLACCAVEMM ++ PRYD +R+G RASPRQSDVMIVAGTLT
Sbjct: 51 DELINWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLT 110
Query: 447 NKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTA 268
NKMAPALRKVYDQMP+PR+VISMGSCAN GCDR+VPVDIYVPGCPPTA
Sbjct: 111 NKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTA 170
Query: 267 EALLYGVLQLQKKIKRMKTIQ 205
EALLYGVL LQKKI+R TI+
Sbjct: 171 EALLYGVLLLQKKIRRTGTIE 191
>UniRef50_A6R2Y3 Cluster: NADH-ubiquinone oxidoreductase 20 kDa
subunit, mitochondrial; n=1; Ajellomyces capsulatus
NAm1|Rep: NADH-ubiquinone oxidoreductase 20 kDa subunit,
mitochondrial - Ajellomyces capsulatus NAm1
Length = 242
Score = 207 bits (505), Expect = 2e-52
Identities = 92/147 (62%), Positives = 113/147 (76%), Gaps = 1/147 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
+D + NW R+GSLWP++ GLACC VEMM ++ PRYD DR G +FRASPRQSD++IVAGT+
Sbjct: 95 IDAVTNWARQGSLWPVSLGLACCGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTV 154
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPT 271
TNKMAPALR VYDQMPDP+WVISMGSCAN G DR++PVD+++PGCPPT
Sbjct: 155 TNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPT 214
Query: 270 AEALLYGVLQLQKK-IKRMKTIQVWYR 193
AEALLY + L+KK I K ++WYR
Sbjct: 215 AEALLYAMAVLRKKSISNTKITRMWYR 241
>UniRef50_O67334 Cluster: NADH-quinone oxidoreductase chain B; n=2;
Aquifex aeolicus|Rep: NADH-quinone oxidoreductase chain
B - Aquifex aeolicus
Length = 179
Score = 198 bits (482), Expect = 1e-49
Identities = 84/136 (61%), Positives = 109/136 (80%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
+++LL WGR+ SLWP+T GLACCA+EMMH AA R+D+DR GV+FRASPRQ+DV+IVAGT+
Sbjct: 14 VEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQADVLIVAGTV 73
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPT 271
NK+AP L+ ++DQMPDP+W ISMG CA+ G DRI+PVD+Y+PGCPPT
Sbjct: 74 VNKVAPMLKLIWDQMPDPKWCISMGGCAS-AGGPFPTYSTLQGVDRIIPVDVYIPGCPPT 132
Query: 270 AEALLYGVLQLQKKIK 223
+ L+YG+LQLQ+KIK
Sbjct: 133 PQGLIYGILQLQRKIK 148
>UniRef50_P56897 Cluster: NADH-quinone oxidoreductase subunit B 2;
n=43; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit B 2 - Rhizobium meliloti
(Sinorhizobium meliloti)
Length = 167
Score = 180 bits (438), Expect = 3e-44
Identities = 77/140 (55%), Positives = 104/140 (74%)
Frame = -3
Query: 627 DDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLT 448
D +++W R+ +LWP TFG+ACCA+EM+ RYD+DR+GVVFR SPRQSDVMI+AGT+T
Sbjct: 18 DSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQSDVMIIAGTVT 77
Query: 447 NKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTA 268
K AP +R++YDQMP+PRWVI+MG+CA G + VPVD++VPGCPP
Sbjct: 78 RKFAPVVRRLYDQMPEPRWVIAMGTCA-ISGGVYNTYAVVQGSETFVPVDVHVPGCPPRP 136
Query: 267 EALLYGVLQLQKKIKRMKTI 208
EAL++G L LQ+KIK+ + +
Sbjct: 137 EALMHGFLLLQEKIKKSRAL 156
>UniRef50_Q8A0F5 Cluster: NADH dehydrogenase I, chain B; n=6;
Bacteroides|Rep: NADH dehydrogenase I, chain B -
Bacteroides thetaiotaomicron
Length = 197
Score = 177 bits (432), Expect = 1e-43
Identities = 75/137 (54%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGT 454
LDDL+NWGR SLWP+TF +CC +E M + A RYDM R+G V RASPRQ+D+++V GT
Sbjct: 42 LDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGT 101
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
+TNKMAP L+++YDQMPDP++V+++G CA G D+I+PVD+Y+PGCPP
Sbjct: 102 ITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPP 161
Query: 273 TAEALLYGVLQLQKKIK 223
EA YG++QLQ+K+K
Sbjct: 162 RPEAFYYGMMQLQRKVK 178
>UniRef50_Q26783 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor; n=6;
Trypanosomatidae|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial precursor -
Trypanosoma brucei brucei
Length = 202
Score = 174 bits (424), Expect = 1e-42
Identities = 77/136 (56%), Positives = 101/136 (74%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
L DL W S WP+TFGLACCAVEMMH A RYD+DR+G+V R +PRQ++++IV+GT+
Sbjct: 56 LHDLTEWCLAYSPWPLTFGLACCAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGTV 115
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPT 271
TNKMAP LR +Y QM +P+WVISMGSCAN GC+R +PVD ++PGCPP+
Sbjct: 116 TNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPPS 175
Query: 270 AEALLYGVLQLQKKIK 223
AE+L++ + LQKKI+
Sbjct: 176 AESLVFCLHTLQKKIR 191
>UniRef50_A5UXK1 Cluster: NADH-quinone oxidoreductase, B subunit;
n=5; Chloroflexi (class)|Rep: NADH-quinone
oxidoreductase, B subunit - Roseiflexus sp. RS-1
Length = 268
Score = 171 bits (417), Expect = 9e-42
Identities = 76/142 (53%), Positives = 104/142 (73%), Gaps = 2/142 (1%)
Frame = -3
Query: 615 NWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGTLTNKM 439
NWGR+ S+WP++FGLACCA+EMM R+D+ R+G +FRASPRQ+D+MIVAGT+T KM
Sbjct: 26 NWGRRSSIWPLSFGLACCAIEMMATGLARFDLARFGAEMFRASPRQADLMIVAGTVTKKM 85
Query: 438 APALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEAL 259
AP + ++Y+QMP+PR+VISMG+CA G D ++PVD+Y+PGCPP EAL
Sbjct: 86 APQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEAL 145
Query: 258 LYGVLQLQKKIKRMKTIQV-WY 196
L+ ++ LQK+I + QV WY
Sbjct: 146 LHALMTLQKQIDAQRLNQVRWY 167
>UniRef50_Q1IL91 Cluster: NADH-quinone oxidoreductase, B subunit;
n=2; Acidobacteria|Rep: NADH-quinone oxidoreductase, B
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 202
Score = 171 bits (415), Expect = 2e-41
Identities = 78/139 (56%), Positives = 103/139 (74%), Gaps = 1/139 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGT 454
+D + NW RK S+WPMTFGLACCA+EM+ + RYD+ R+G VFR SPRQSD+MIVAGT
Sbjct: 17 VDYVFNWARKSSVWPMTFGLACCAIEMITASTARYDIARFGSEVFRPSPRQSDLMIVAGT 76
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
+T KMAP ++++Y+QMP+P+WV++MG+CA+ G D+IVPVD+YV GCPP
Sbjct: 77 VTLKMAPVVQRIYEQMPEPKWVMAMGACAS-VGGPFNTYATLQGVDKIVPVDVYVVGCPP 135
Query: 273 TAEALLYGVLQLQKKIKRM 217
E L YG+L+LQ KI M
Sbjct: 136 RPENLFYGLLKLQDKIDHM 154
>UniRef50_Q3ZXS0 Cluster: Proton-translocating NADH-quinone
oxidoreductase, B subunit; n=3; Dehalococcoides|Rep:
Proton-translocating NADH-quinone oxidoreductase, B
subunit - Dehalococcoides sp. (strain CBDB1)
Length = 200
Score = 169 bits (411), Expect = 5e-41
Identities = 73/143 (51%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGT 454
++ +LNW R SLWP+ FGLACCA+EMM +AA R+D+ R+G+ +FRASPRQ+D+MIVAGT
Sbjct: 57 VEKVLNWSRHYSLWPVMFGLACCAIEMMCMAASRWDLARFGMDIFRASPRQADLMIVAGT 116
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
LT KMAP L+++YDQMP+P+WV++MG+C G + +VPVD+YVPGCPP
Sbjct: 117 LTWKMAPWLKRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPP 176
Query: 273 TAEALLYGVLQLQKKIKRMKTIQ 205
EAL+ ++ + +KI + + ++
Sbjct: 177 RPEALMRAIMDIHEKIDKTRILK 199
>UniRef50_Q1IPE7 Cluster: NADH-quinone oxidoreductase, B subunit;
n=7; Bacteria|Rep: NADH-quinone oxidoreductase, B
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 213
Score = 167 bits (405), Expect = 3e-40
Identities = 76/137 (55%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGT 454
LD+ +NW RK S+WPMTFGLACCA+EMM + A R+D+ R+G VFR SPRQSD+MI+AG
Sbjct: 61 LDNAVNWIRKNSIWPMTFGLACCAIEMMSMGASRFDIARFGAEVFRPSPRQSDLMIIAGR 120
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
++ KMAP +R +Y QMP+P+WVISMG+CA G ++ +PVDIYVPGCPP
Sbjct: 121 VSQKMAPVIRHLYLQMPEPKWVISMGACAT-SGGVFNNYALVQGVNQYIPVDIYVPGCPP 179
Query: 273 TAEALLYGVLQLQKKIK 223
E L+Y + LQ+KI+
Sbjct: 180 RPEQLIYAITLLQEKIQ 196
>UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits;
n=32; Proteobacteria|Rep: NADH dehydrogenase I, B/C/D
subunits - Geobacter sulfurreducens
Length = 792
Score = 165 bits (402), Expect = 6e-40
Identities = 74/138 (53%), Positives = 101/138 (73%), Gaps = 1/138 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGT 454
LDDL+NWGR SLWPM FGL+CC VEMM RYD+ R+G V R +PR++D+M++AGT
Sbjct: 16 LDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRGTPREADLMVIAGT 75
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
+ KMAP++ ++Y+QM +P+WVISMGSCAN G ++I+PVD++VPGCPP
Sbjct: 76 VFKKMAPSILRLYEQMAEPKWVISMGSCAN-SGGMYDVYSVVQGVNQIIPVDVHVPGCPP 134
Query: 273 TAEALLYGVLQLQKKIKR 220
EA L G++ LQ+KI+R
Sbjct: 135 RPEAFLQGLMLLQEKIRR 152
>UniRef50_Q8KEC2 Cluster: NADH dehydrogenase I, 20 kDa subunit;
n=26; Bacteria|Rep: NADH dehydrogenase I, 20 kDa subunit
- Chlorobium tepidum
Length = 189
Score = 165 bits (401), Expect = 8e-40
Identities = 74/137 (54%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
+D+++NW R SLWPM FGLACCA+EMM A YD++R+G+ R+SPRQSD+MIVAGT+
Sbjct: 18 VDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTV 77
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCAN-XXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
T KMA + +Y+QMP+PR+V+SMGSC+N G DRI+PVD+YVPGCPP
Sbjct: 78 TMKMAERVVTLYEQMPEPRYVLSMGSCSNSGGPYWHHGYHVLKGVDRIIPVDVYVPGCPP 137
Query: 273 TAEALLYGVLQLQKKIK 223
EAL+ G++++Q+ I+
Sbjct: 138 RPEALIGGLMKIQELIR 154
>UniRef50_Q9F2W1 Cluster: NADH dehydrogenase subunit NuoB2; n=5;
Actinomycetales|Rep: NADH dehydrogenase subunit NuoB2 -
Streptomyces coelicolor
Length = 232
Score = 162 bits (394), Expect = 6e-39
Identities = 71/135 (52%), Positives = 100/135 (74%), Gaps = 1/135 (0%)
Frame = -3
Query: 621 LLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVV-FRASPRQSDVMIVAGTLTN 445
+LNWGR+ SLW FGLACCA+E + + R+D R GV+ F PRQ+D+M+V+GT+T+
Sbjct: 34 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 93
Query: 444 KMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAE 265
KMAPA++++Y+QMP+P++VIS G+C+N G D+I+PVD+YVPGCPP E
Sbjct: 94 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 153
Query: 264 ALLYGVLQLQKKIKR 220
ALL G+L+LQ+KI R
Sbjct: 154 ALLQGILKLQEKIAR 168
>UniRef50_Q1K3R2 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Desulfuromonas acetoxidans DSM 684|Rep:
NADH-quinone oxidoreductase, B subunit - Desulfuromonas
acetoxidans DSM 684
Length = 196
Score = 162 bits (393), Expect = 7e-39
Identities = 78/137 (56%), Positives = 98/137 (71%), Gaps = 3/137 (2%)
Frame = -3
Query: 627 DDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGTL 451
D +LN R SLWPMTFGLACCA+EMM R+D+ RYG VFR SPRQSD+MIVAGT+
Sbjct: 44 DKILNLCRANSLWPMTFGLACCAIEMMCSGMARFDISRYGAEVFRPSPRQSDLMIVAGTV 103
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCA--NXXXXXXXXXXXXXGCDRIVPVDIYVPGCP 277
KMAPA+ +Y+QMP PR+VI++G+CA G D+++PVD+YVPGCP
Sbjct: 104 NKKMAPAVVTLYEQMPAPRYVIALGNCAISGGPFAVEANYDVVLGVDQLIPVDVYVPGCP 163
Query: 276 PTAEALLYGVLQLQKKI 226
P EAL+ G+LQLQ+KI
Sbjct: 164 PRPEALIEGILQLQEKI 180
>UniRef50_Q608X8 Cluster: NADH dehydrogenase I, B subunit; n=7;
Bacteria|Rep: NADH dehydrogenase I, B subunit -
Methylococcus capsulatus
Length = 213
Score = 160 bits (389), Expect = 2e-38
Identities = 71/137 (51%), Positives = 97/137 (70%), Gaps = 1/137 (0%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAG 457
RLDDL+ WGRK S+WP FGL+CC VEM R+D+ R+G V RASPRQ+D+M+++G
Sbjct: 33 RLDDLVRWGRKNSIWPFNFGLSCCYVEMATAFTSRFDIARFGSEVIRASPRQADLMVISG 92
Query: 456 TLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCP 277
T+ KMAP ++ +YDQ+ +P+W+ISMGSCAN G D+ +PVD+YVPGCP
Sbjct: 93 TVFRKMAPVVKHLYDQLLEPKWIISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCP 151
Query: 276 PTAEALLYGVLQLQKKI 226
P EALL G++ LQ+ +
Sbjct: 152 PRPEALLEGLMMLQESV 168
>UniRef50_P65576 Cluster: NADH-quinone oxidoreductase subunit B;
n=45; Bacteria|Rep: NADH-quinone oxidoreductase subunit
B - Mycobacterium bovis
Length = 184
Score = 159 bits (385), Expect = 7e-38
Identities = 72/139 (51%), Positives = 101/139 (72%), Gaps = 1/139 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVV-FRASPRQSDVMIVAGT 454
++ + + RK SLWP TFGLACCA+EMM A PR+D+ R+G+ F A+PRQ+D+MIVAG
Sbjct: 16 VEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGR 75
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
++ KMAP LR++YDQM +P+WV++MG CA+ G D +VPVDIY+PGCPP
Sbjct: 76 VSQKMAPVLRQIYDQMAEPKWVLAMGVCAS-SGGMFNNYAIVQGVDHVVPVDIYLPGCPP 134
Query: 273 TAEALLYGVLQLQKKIKRM 217
E LL+ +L+L +KI++M
Sbjct: 135 RPEMLLHAILKLHEKIQQM 153
>UniRef50_Q9P9G2 Cluster: F420H2 dehydrogenase subunit FpoB; n=6;
Archaea|Rep: F420H2 dehydrogenase subunit FpoB -
Methanosarcina mazei (Methanosarcina frisia)
Length = 184
Score = 158 bits (384), Expect = 9e-38
Identities = 67/140 (47%), Positives = 92/140 (65%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 454
+ D++NWGRK SLW MT + CC VEM+ YD DR+G++ R SPR +DVMI++G
Sbjct: 39 KAQDIINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGY 98
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
+T K PAL++++DQMP P+WVI+MG CA D I P+D+Y+PGCPP
Sbjct: 99 VTKKYLPALKRLWDQMPAPKWVIAMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPP 158
Query: 273 TAEALLYGVLQLQKKIKRMK 214
EAL+ G ++LQ+KIK K
Sbjct: 159 RPEALIQGFVELQEKIKARK 178
>UniRef50_Q6MIR4 Cluster: NADH dehydrogenase I chain B; n=2;
Deltaproteobacteria|Rep: NADH dehydrogenase I chain B -
Bdellovibrio bacteriovorus
Length = 187
Score = 157 bits (382), Expect = 2e-37
Identities = 66/137 (48%), Positives = 99/137 (72%), Gaps = 1/137 (0%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAG 457
+LD ++ WGRK SLWPM +G ACC +E M + P+YD+ R+G V R SPRQ+D+++VAG
Sbjct: 33 KLDAIVAWGRKNSLWPMPYGTACCGIEFMSVMGPKYDLARFGAEVARFSPRQADLLVVAG 92
Query: 456 TLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCP 277
T+T KMAP + ++Y QM +P++V+SMG+CA+ G D+++PVD+Y+PGCP
Sbjct: 93 TITEKMAPVIVRIYQQMLEPKYVLSMGACAS-SGGFYRAYHVLQGVDKVIPVDVYIPGCP 151
Query: 276 PTAEALLYGVLQLQKKI 226
PT EA++ G++ LQ+ I
Sbjct: 152 PTPEAVMDGIMALQRMI 168
>UniRef50_A5GIB4 Cluster: NAD(P)H-quinone oxidoreductase subunit K;
n=10; cellular organisms|Rep: NAD(P)H-quinone
oxidoreductase subunit K - Synechococcus sp. (strain
WH7803)
Length = 248
Score = 155 bits (375), Expect = 1e-36
Identities = 67/136 (49%), Positives = 97/136 (71%), Gaps = 1/136 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
LDDL NW R SLWP+ +G ACC +E + R+D DR+G+V R+SPRQ+D++IVAGT+
Sbjct: 45 LDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTV 104
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
T KMAPAL ++Y+QMP+P++VI+MG+C G D+++PVD+Y+PGCPP
Sbjct: 105 TMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYMPGCPP 164
Query: 273 TAEALLYGVLQLQKKI 226
EA+ V++L+KK+
Sbjct: 165 RPEAIFDAVIKLRKKV 180
>UniRef50_Q44240 Cluster: NAD(P)H-quinone oxidoreductase subunit K
(EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit K); n=65;
cellular organisms|Rep: NAD(P)H-quinone oxidoreductase
subunit K (EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit
K) - Anabaena sp. (strain PCC 7120)
Length = 245
Score = 153 bits (370), Expect = 4e-36
Identities = 64/136 (47%), Positives = 96/136 (70%), Gaps = 1/136 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
+DDL NW R SLWP+ FG ACC +E + R+D DR+G++ R+SPRQ+D++I AGT+
Sbjct: 37 VDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTI 96
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
T KMAP L ++Y+QMP+P++VI+MG+C G D+++PVD+Y+PGCPP
Sbjct: 97 TMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPP 156
Query: 273 TAEALLYGVLQLQKKI 226
EA++ +++L+KKI
Sbjct: 157 RPEAIIDAIIKLRKKI 172
>UniRef50_Q9HRM0 Cluster: NADH dehydrogenase/oxidoreductase; n=6;
Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
- Halobacterium salinarium (Halobacterium halobium)
Length = 235
Score = 152 bits (369), Expect = 6e-36
Identities = 64/137 (46%), Positives = 99/137 (72%), Gaps = 1/137 (0%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAG 457
+ D +NW R S++ + FG+ACC++EMMH + ++D+DR+ V RASPRQ+DVMIV G
Sbjct: 50 KFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPG 109
Query: 456 TLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCP 277
T+ +K AP +++VYDQMP+P++V++MG+C+ G + ++PVDI++PGCP
Sbjct: 110 TIVSKFAPRMKRVYDQMPEPKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIHIPGCP 169
Query: 276 PTAEALLYGVLQLQKKI 226
P EAL+YGV +LQ++I
Sbjct: 170 PRPEALVYGVAKLQERI 186
>UniRef50_Q67KN6 Cluster: NADH dehydrogenase I subunit B; n=5;
Bacteria|Rep: NADH dehydrogenase I subunit B -
Symbiobacterium thermophilum
Length = 182
Score = 151 bits (366), Expect = 1e-35
Identities = 68/137 (49%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
Frame = -3
Query: 621 LLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGTLTN 445
+L WG S WP+ FG+ACCA+EMM + +YD+ R+G R SPRQ+DVMIVAGT+
Sbjct: 39 VLGWGYGNSTWPLGFGIACCAIEMMAACSSKYDIARFGSEAMRMSPRQADVMIVAGTVNE 98
Query: 444 KMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAE 265
KMA +R++YDQM +P++VI+MG+CA+ G ++VPVD+YVPGCPP E
Sbjct: 99 KMAVVVRRLYDQMSEPKFVIAMGACASNGGPYWDTYNVVDGVHKVVPVDVYVPGCPPRPE 158
Query: 264 ALLYGVLQLQKKIKRMK 214
ALL G++++Q+ IK K
Sbjct: 159 ALLQGLMEIQEMIKTGK 175
>UniRef50_P19050 Cluster: NAD(P)H-quinone oxidoreductase subunit K
(EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit K); n=16;
cellular organisms|Rep: NAD(P)H-quinone oxidoreductase
subunit K (EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit
K) - Synechocystis sp. (strain PCC 6803)
Length = 248
Score = 151 bits (366), Expect = 1e-35
Identities = 62/136 (45%), Positives = 96/136 (70%), Gaps = 1/136 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
+DDL NW + SLWP+ +G ACC +E + R+D DR+G+V R+SPRQ+D++I AGT+
Sbjct: 41 VDDLYNWAKLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTI 100
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
T KMAPAL ++Y++MP+P++VI+MG+C G D+++PVD+Y+PGCPP
Sbjct: 101 TMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPP 160
Query: 273 TAEALLYGVLQLQKKI 226
EA+ +++L+KK+
Sbjct: 161 RPEAIFDAIIKLRKKV 176
>UniRef50_Q9I0K0 Cluster: NADH-quinone oxidoreductase subunit B;
n=78; Bacteria|Rep: NADH-quinone oxidoreductase subunit
B - Pseudomonas aeruginosa
Length = 225
Score = 151 bits (365), Expect = 2e-35
Identities = 70/145 (48%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAGT 454
L+ +NWGRK SLWP FGL+CC VEM +D+ R+G V RASPRQ+D M++AGT
Sbjct: 47 LNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGT 106
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
KMAP ++++Y+QM +P+WVISMGSCAN G D+ +PVD+Y+PGCPP
Sbjct: 107 CFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPP 165
Query: 273 TAEALLYGVLQLQKKIKRMKTIQVW 199
EA L G++ LQ+ I + + W
Sbjct: 166 RPEAFLQGLMLLQESIGQERRPLSW 190
>UniRef50_A3PKI1 Cluster: NADH-quinone oxidoreductase, B subunit;
n=5; Proteobacteria|Rep: NADH-quinone oxidoreductase, B
subunit - Rhodobacter sphaeroides (strain ATCC 17029 /
ATH 2.4.9)
Length = 205
Score = 149 bits (362), Expect = 4e-35
Identities = 72/137 (52%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAG 457
RLDDL+ W RK SLWP FGL+CC VEM P YD R+G V R++PRQ+D++IV+G
Sbjct: 25 RLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQARFGAEVIRSTPRQADLLIVSG 84
Query: 456 TLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCP 277
T+ KMA L ++Y QM +PRWVISMG+CAN G D +PVD+YVPGCP
Sbjct: 85 TVFRKMAVPLYRLYSQMREPRWVISMGACAN-SGGMYDIYSVVQGVDSFLPVDVYVPGCP 143
Query: 276 PTAEALLYGVLQLQKKI 226
P EAL+ ++ LQ KI
Sbjct: 144 PRPEALMEALVLLQSKI 160
>UniRef50_A0RY66 Cluster: NADH-ubiquinone oxidoreductase, subunit B;
n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
subunit B - Cenarchaeum symbiosum
Length = 160
Score = 149 bits (360), Expect = 7e-35
Identities = 67/136 (49%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = -3
Query: 618 LNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFR-ASPRQSDVMIVAGTLTNK 442
+NWGR SLWP+ ACC+VE + P+YD++R+G++ S RQ D+++V GT+T K
Sbjct: 20 INWGRIWSLWPVHIETACCSVEFGAASGPKYDVERFGIIEAFGSLRQCDLIVVQGTITRK 79
Query: 441 MAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEA 262
MAP LR VYDQMP+P++VI+MG+CA G D ++PVD+YVPGCPP E
Sbjct: 80 MAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVPGCPPRPET 139
Query: 261 LLYGVLQLQKKIKRMK 214
L+ G + LQ+KIKRM+
Sbjct: 140 LIQGCMLLQEKIKRMR 155
>UniRef50_Q2S5J2 Cluster: NADH-quinone oxidoreductase chain b; n=3;
Bacteria|Rep: NADH-quinone oxidoreductase chain b -
Salinibacter ruber (strain DSM 13855)
Length = 213
Score = 146 bits (353), Expect = 5e-34
Identities = 67/138 (48%), Positives = 93/138 (67%), Gaps = 1/138 (0%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAG 457
R+D LNW R SL PM GLACCA+EMM A P+YD R+G R SPRQ+D+MIVAG
Sbjct: 16 RVDTFLNWARSNSLMPMPMGLACCAIEMMGFAGPKYDSARFGSEAMRFSPRQADLMIVAG 75
Query: 456 TLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCP 277
+ KM+ A+R+V+DQM DP+W I+MG+CA+ G D +PVD+Y+ GCP
Sbjct: 76 WCSYKMSHAIRRVWDQMGDPKWCIAMGACAS-TGGMHRCYGVVQGVDNFLPVDVYISGCP 134
Query: 276 PTAEALLYGVLQLQKKIK 223
P E++L+ ++ +Q+KI+
Sbjct: 135 PRPESVLHALMDIQEKIR 152
>UniRef50_A4J659 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Desulfotomaculum reducens MI-1|Rep: NADH-quinone
oxidoreductase, B subunit - Desulfotomaculum reducens
MI-1
Length = 196
Score = 142 bits (345), Expect = 5e-33
Identities = 66/137 (48%), Positives = 96/137 (70%), Gaps = 2/137 (1%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVE-MMHIAAPRYDMDRYGV-VFRASPRQSDVMIVAG 457
L+ LLN R SLWPM FGLACCA+E +M R+D+ R+G V RASPRQ+DVM+V G
Sbjct: 48 LEKLLNLARANSLWPMGFGLACCAIEGLMAANMARFDLARFGYEVMRASPRQADVMLVCG 107
Query: 456 TLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCP 277
T+T K AP + ++Y+QM +P++VI+MGSCA G D+++PVD+Y+PGC
Sbjct: 108 TVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSVVPGVDKLIPVDVYIPGCA 167
Query: 276 PTAEALLYGVLQLQKKI 226
P +A+++G ++L++KI
Sbjct: 168 PRPDAVIHGFMKLKEKI 184
>UniRef50_Q8F7Q0 Cluster: NADH dehydrogenase I chain B; n=7;
Bacteria|Rep: NADH dehydrogenase I chain B - Leptospira
interrogans
Length = 186
Score = 142 bits (343), Expect = 8e-33
Identities = 66/137 (48%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRA-SPRQSDVMIVAGT 454
++ ++ WGR SLWP F ACC +E M A YD+ R+G + SPRQ+D+++V GT
Sbjct: 23 VESVIQWGRSYSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSFSPRQADMILVLGT 82
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
+T KMAP LR++YDQM +P++VIS+G+CA+ G DRI+PVD+YVPGCPP
Sbjct: 83 ITYKMAPVLRQIYDQMAEPKFVISVGACAS-SGGMFHTYGVLQGVDRILPVDVYVPGCPP 141
Query: 273 TAEALLYGVLQLQKKIK 223
EA+L +L+LQ K+K
Sbjct: 142 RPEAILDALLKLQTKLK 158
>UniRef50_A7H9V3 Cluster: NADH-quinone oxidoreductase, B subunit;
n=5; Bacteria|Rep: NADH-quinone oxidoreductase, B
subunit - Anaeromyxobacter sp. Fw109-5
Length = 183
Score = 138 bits (333), Expect = 1e-31
Identities = 64/133 (48%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Frame = -3
Query: 618 LNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVF-RASPRQSDVMIVAGTLTNK 442
L W RK SL+ F ACC +E M +A+ RYD+DR+G R SPRQ+D++IV GT+ K
Sbjct: 30 LGWARKYSLFQYPFVTACCGMEFMTVASARYDLDRFGAALPRFSPRQADLLIVVGTVNCK 89
Query: 441 MAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEA 262
AP LR+VY+Q+ +P+WV++ G CA+ G DRIVPVD+Y+PGCPP E
Sbjct: 90 QAPILRRVYEQIAEPKWVVAFGVCAS-SGGFYDNYATVQGIDRIVPVDVYIPGCPPRPEQ 148
Query: 261 LLYGVLQLQKKIK 223
+L G++ LQ+KI+
Sbjct: 149 VLDGIMLLQQKIQ 161
>UniRef50_A2ZXB2 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 149
Score = 134 bits (323), Expect = 2e-30
Identities = 57/71 (80%), Positives = 64/71 (90%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 454
++DDL+NW R+GS+WPMTFGLACCAVEMMH A RYD DR+GV+FR SPRQSD MIVAGT
Sbjct: 52 KVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGT 111
Query: 453 LTNKMAPALRK 421
LTNKMAPALRK
Sbjct: 112 LTNKMAPALRK 122
>UniRef50_Q8ZU66 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=5; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
subunit - Pyrobaculum aerophilum
Length = 190
Score = 132 bits (319), Expect = 7e-30
Identities = 59/137 (43%), Positives = 90/137 (65%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 454
+L+ + WG + SLWP+ +CC VE+ H +AP +D +R+GV+ + RQ++V+IV GT
Sbjct: 14 KLERVFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFNTMRQTNVIIVEGT 73
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
+T KMA L++VY+QMP+P++V++MG+CA D IVPVD+Y+ GCPP
Sbjct: 74 ITRKMAKVLKQVYEQMPEPKFVLAMGACA-VRGGLFWNSYHVVQVDTIVPVDVYIAGCPP 132
Query: 273 TAEALLYGVLQLQKKIK 223
T EA++ + L KIK
Sbjct: 133 TPEAVIRAFIMLHNKIK 149
>UniRef50_Q4J8C7 Cluster: NADH:ubiquinone oxidoreductase, B subunit;
n=6; Thermoprotei|Rep: NADH:ubiquinone oxidoreductase, B
subunit - Sulfolobus acidocaldarius
Length = 171
Score = 126 bits (304), Expect = 4e-28
Identities = 60/136 (44%), Positives = 82/136 (60%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
+ L +WG SLWP +CC E AA R+D +RYGV+ +S RQ++++++ GTL
Sbjct: 28 IKSLKDWGTSFSLWPPHLTTSCCGTEFGAFAAARFDAERYGVLPFSSARQTNLLVIEGTL 87
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPT 271
T KM A + VYDQMP+P++VI+MG+CA D +PVDIY PGCP
Sbjct: 88 TRKMGRAAKIVYDQMPEPKFVIAMGACALEGGIFWNSYNTVLPSDLGIPVDIYAPGCPTR 147
Query: 270 AEALLYGVLQLQKKIK 223
EAL VL LQK+I+
Sbjct: 148 PEALARAVLLLQKRIR 163
>UniRef50_O28446 Cluster: F420H2:quinone oxidoreductase, 39.7 kDa
subunit, putative; n=4; Archaea|Rep: F420H2:quinone
oxidoreductase, 39.7 kDa subunit, putative -
Archaeoglobus fulgidus
Length = 353
Score = 123 bits (296), Expect = 4e-27
Identities = 60/136 (44%), Positives = 80/136 (58%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
L + WG K SLWP+ ACC E+ H A YD +R G + RQ++++IV G +
Sbjct: 16 LGPIKKWGTKWSLWPVHLVTACCGAELAHAFACGYDGERIGALNYGIARQTNLIIVEGAI 75
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPT 271
T KMA LR ++QMPDP++VI MG+C D +VPVD ++PGCPPT
Sbjct: 76 TRKMAKVLRITWEQMPDPKFVIVMGACGLQGGIFWNGYHMVKPSD-VVPVDFFIPGCPPT 134
Query: 270 AEALLYGVLQLQKKIK 223
EALL G+ QLQ KI+
Sbjct: 135 PEALLRGIRQLQFKIE 150
>UniRef50_A3H7K7 Cluster: NADH-quinone oxidoreductase, B subunit;
n=4; Thermoproteaceae|Rep: NADH-quinone oxidoreductase,
B subunit - Caldivirga maquilingensis IC-167
Length = 374
Score = 123 bits (296), Expect = 4e-27
Identities = 57/135 (42%), Positives = 82/135 (60%)
Frame = -3
Query: 627 DDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLT 448
D L +WG K S+WP ACC VE H +AP YD +R+G + PRQ++ +++ GT+T
Sbjct: 25 DSLASWGTKFSIWPAHLVTACCGVEFAHASAPGYDAERWGFLPIFGPRQTNSIVIEGTVT 84
Query: 447 NKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTA 268
KMA ++ Y+QMP P++VI+MGSCA + IVPVD +V GCPPT
Sbjct: 85 RKMARIVKTAYEQMPYPKFVIAMGSCA-MEGGVFWNSYHVVRVNEIVPVDAWVMGCPPTP 143
Query: 267 EALLYGVLQLQKKIK 223
EA++ + +Q KI+
Sbjct: 144 EAVIRAIRMVQSKIE 158
>UniRef50_Q9YC23 Cluster: NuoB homolog; n=1; Aeropyrum pernix|Rep:
NuoB homolog - Aeropyrum pernix
Length = 199
Score = 121 bits (291), Expect = 2e-26
Identities = 53/146 (36%), Positives = 87/146 (59%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
LD +++W SLWP+ +CC+ E APR D +++G + PRQ++++I+ GT+
Sbjct: 31 LDKMVDWATSFSLWPVHLTTSCCSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGTV 90
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPT 271
T KMA A+R ++QMP P++ I+MG+CA +++P+DIY+PGCPP
Sbjct: 91 TKKMACAVRLTWEQMPHPKFAIAMGACALDGGLFYNSYNIVKPW-QVLPIDIYIPGCPPR 149
Query: 270 AEALLYGVLQLQKKIKRMKTIQVWYR 193
E + +++LQ+KI+ K W R
Sbjct: 150 PEGVARAIVELQRKIRSKKIASGWVR 175
>UniRef50_A0L9R6 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Magnetococcus sp. MC-1|Rep: NADH-quinone
oxidoreductase, B subunit - Magnetococcus sp. (strain
MC-1)
Length = 213
Score = 120 bits (290), Expect = 2e-26
Identities = 56/136 (41%), Positives = 81/136 (59%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
++DL NW R S+W + FG C A+EM + PR+D RYGV +RA+PRQS++ IV+G L
Sbjct: 43 VEDLFNWARSNSIWVLGFGTGCGAIEMRPLMTPRFDAYRYGVQWRATPRQSNLFIVSGYL 102
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPT 271
+ K + + Y+QM P++V+ +GSC D +PVD+YV GC P
Sbjct: 103 SVKTLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWDSYNTIKQLDDYLPVDLYVTGCMPR 162
Query: 270 AEALLYGVLQLQKKIK 223
EALL G+ L+K I+
Sbjct: 163 PEALLSGIEALKKIIR 178
>UniRef50_A3DKH2 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Staphylothermus marinus F1|Rep: NADH-quinone
oxidoreductase, B subunit - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 165
Score = 111 bits (268), Expect = 1e-23
Identities = 50/130 (38%), Positives = 83/130 (63%), Gaps = 3/130 (2%)
Frame = -3
Query: 591 WPMTFGL-AC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 421
W + F AC C +E++ P YD +R+G+ S R +D+++V G +T K A L++
Sbjct: 32 WLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGAVTKKAAERLKR 91
Query: 420 VYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQ 241
+Y+QMPDP++V+++G+CA G D+++PVDIYVPGCPP EA+L G+++
Sbjct: 92 LYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPPRPEAILDGIVK 151
Query: 240 LQKKIKRMKT 211
L K+++ +T
Sbjct: 152 LLKRLESGET 161
>UniRef50_Q2H7B9 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 189
Score = 110 bits (264), Expect = 3e-23
Identities = 45/58 (77%), Positives = 53/58 (91%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAG 457
LD L+NW R+GSLWPM+FGLACCA+EMMH++ PRYD DR G++FRASPRQSDVMIVAG
Sbjct: 86 LDGLINWARQGSLWPMSFGLACCAIEMMHLSMPRYDNDRQGIIFRASPRQSDVMIVAG 143
Score = 68.1 bits (159), Expect = 2e-10
Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Frame = -3
Query: 318 DRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKR-MKTIQVWYR 193
DRIVPVDIYVPGCPPTAEAL YG+ QLQKK+ + ++WYR
Sbjct: 146 DRIVPVDIYVPGCPPTAEALQYGIFQLQKKMAAGQRFTRMWYR 188
>UniRef50_Q9V0R6 Cluster: NADH ubiquinone oxidoreductase subunit;
n=8; Archaea|Rep: NADH ubiquinone oxidoreductase subunit
- Pyrococcus abyssi
Length = 170
Score = 109 bits (262), Expect = 5e-23
Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E++ PRYD +R+GV SPR +D+++V G +TN+ ++ VY+Q P+P+ VI
Sbjct: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYG-VLQLQKKIKRMK 214
++GSC DR++PVD++VPGCPP EA+L+G VL L+K K +K
Sbjct: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLK 160
>UniRef50_A6Q8J4 Cluster: NADH-quinone oxidoreductase, chain B; n=2;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
chain B - Sulfurovum sp. (strain NBC37-1)
Length = 140
Score = 107 bits (258), Expect = 2e-22
Identities = 44/119 (36%), Positives = 75/119 (63%)
Frame = -3
Query: 579 FGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPD 400
F CC++EM PRYD +RYG + +PRQ+DV+++ G ++ K+ PAL + Y QMP+
Sbjct: 4 FCTGCCSLEMAAAMGPRYDWERYGYMPTPTPRQADVLMITGLVSKKILPALLRTYAQMPE 63
Query: 399 PRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIK 223
P++V+++G+C+ I+P D+++ GCPP EA++ G+ Q+++KIK
Sbjct: 64 PKYVVALGACSFDGGPYNDSLSVIKNPTEILPADVFIAGCPPKPEAIIEGLEQVKQKIK 122
>UniRef50_Q9V0S7 Cluster: NuoB NADH dehydrogenase I, subunit B; n=4;
Thermococcaceae|Rep: NuoB NADH dehydrogenase I, subunit
B - Pyrococcus abyssi
Length = 195
Score = 106 bits (254), Expect = 5e-22
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Frame = -3
Query: 627 DDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLT 448
+ L NW RK SLW ++F C +EM + RYD++R+G++ SPRQ D+ ++ G +T
Sbjct: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
Query: 447 NKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTA 268
K + Y+ PDP++V++ GSC D+ +PVD+++ GC P
Sbjct: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
Query: 267 EALLYGVLQLQKKI--------KRMKTIQVWYR 193
EA+L G+ +L + I KR K WYR
Sbjct: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYR 163
>UniRef50_A1ALK4 Cluster: NADH-quinone oxidoreductase, B subunit;
n=2; Pelobacter propionicus DSM 2379|Rep: NADH-quinone
oxidoreductase, B subunit - Pelobacter propionicus
(strain DSM 2379)
Length = 164
Score = 104 bits (249), Expect = 2e-21
Identities = 46/145 (31%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGL-AC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 460
+D ++NW R S W + + AC C +E++ P +D++R+G + +PR +DV++ +
Sbjct: 4 IDRIVNWARIKSPWVIHYNTGACNGCDIEIVATLTPVFDIERFGCQLKGTPRHADVLLCS 63
Query: 459 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGC 280
G +T + + ++Y+QMP+P++V+++GSCA G D ++PV YVPGC
Sbjct: 64 GPVTRQSRDRIIRIYEQMPEPKFVVAVGSCACSGGVFQGCYNILGGIDSVIPVSAYVPGC 123
Query: 279 PPTAEALLYGVLQLQKKIKRMKTIQ 205
EA++ GV++L ++R K ++
Sbjct: 124 AARPEAIIDGVVKLLTTLERKKAVE 148
>UniRef50_A6DBV2 Cluster: NADH:ubiquinone oxidoreductase 20 kD
subunit and related Fe-S oxidoreductase; n=1;
Caminibacter mediatlanticus TB-2|Rep: NADH:ubiquinone
oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase - Caminibacter mediatlanticus TB-2
Length = 164
Score = 102 bits (244), Expect = 8e-21
Identities = 46/125 (36%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Frame = -3
Query: 606 RKGSLWPM---TFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMA 436
RK S W + T G C +E++ AP+YD++R+G + R +P+QSD+++V G +T
Sbjct: 8 RKKSPWILHYNTGGCNGCDIEILATLAPKYDIERFGALNRGNPKQSDILLVTGPVTMHCK 67
Query: 435 PALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALL 256
LR++Y +MP+P+ V++MG+C + G D I+PVD+++PGC P EAL+
Sbjct: 68 DVLRRLYLEMPEPKVVVAMGACGHGGGVFRHLYNVNDGVDSIIPVDVWIPGCCPRPEALI 127
Query: 255 YGVLQ 241
G+++
Sbjct: 128 DGIVE 132
>UniRef50_UPI00015BB165 Cluster: NADH-quinone oxidoreductase, B
subunit; n=1; Ignicoccus hospitalis KIN4/I|Rep:
NADH-quinone oxidoreductase, B subunit - Ignicoccus
hospitalis KIN4/I
Length = 207
Score = 99 bits (238), Expect = 4e-20
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Frame = -3
Query: 624 DLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTN 445
+ L W R+ SLW + G+ CCA+EMM A +D +R GV+ RA+PRQ DV+++ G +
Sbjct: 22 EALKWSRRNSLWLLHLGIMCCAIEMMQAAFAFHDFERLGVLARATPRQVDVILINGPVNR 81
Query: 444 KMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVP-------VDIYV- 289
K+A LR+++ Q P PR+VI MG CA G ++ D++V
Sbjct: 82 KLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDGIHEVIESLPEEYRKDVHVV 141
Query: 288 --PGCPPTAEALLYGVLQLQKKI 226
GCPP E LL +L++++ I
Sbjct: 142 NLAGCPPRPEGLLRAILKMEELI 164
>UniRef50_Q9X0U1 Cluster: NADH dehydrogenase, putative; n=4;
Thermotogaceae|Rep: NADH dehydrogenase, putative -
Thermotoga maritima
Length = 178
Score = 99.1 bits (236), Expect = 8e-20
Identities = 44/129 (34%), Positives = 70/129 (54%)
Frame = -3
Query: 606 RKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPAL 427
R S+W + + C AVE+ R+DM+R+G+ A+PRQ+D++++ G L K +
Sbjct: 15 RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74
Query: 426 RKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGV 247
Y+QMPDP++V+ GSC D +PVD+Y+ GC P EA+L
Sbjct: 75 IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134
Query: 246 LQLQKKIKR 220
L +KI++
Sbjct: 135 NYLMEKIRK 143
>UniRef50_A3DM92 Cluster: NADH-quinone oxidoreductase, B subunit;
n=1; Staphylothermus marinus F1|Rep: NADH-quinone
oxidoreductase, B subunit - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 179
Score = 98.3 bits (234), Expect = 1e-19
Identities = 47/135 (34%), Positives = 74/135 (54%)
Frame = -3
Query: 612 WGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAP 433
W R S+W + + AC A+E+ D +R+G++ SPRQ+DV+++ G +T K
Sbjct: 14 WVRSRSIWMIHYCSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKKTLK 73
Query: 432 ALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLY 253
L ++Y QMP+PR+V+ +C D +PVD++VPGC P AE L
Sbjct: 74 VLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAEDWLQ 133
Query: 252 GVLQLQKKIKRMKTI 208
G L+L+KKI + +
Sbjct: 134 GFLKLRKKISEGRIV 148
>UniRef50_Q89GK1 Cluster: HycG protein; n=14; Proteobacteria|Rep:
HycG protein - Bradyrhizobium japonicum
Length = 177
Score = 97.5 bits (232), Expect = 2e-19
Identities = 42/109 (38%), Positives = 65/109 (59%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E+ + YD++R+G+ F ASPR +DV++V G +T M AL + Y PDP+WV+
Sbjct: 58 CELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTKNMRDALERTYHATPDPKWVV 117
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQL 238
++G CA G ++VPVD+++PGCPP +L G+L L
Sbjct: 118 AVGDCARDGGCFAGSYAVVGGVSQVVPVDLHIPGCPPPPTTILRGLLAL 166
>UniRef50_Q609U0 Cluster: Hydrogenase subunit; n=2;
Proteobacteria|Rep: Hydrogenase subunit - Methylococcus
capsulatus
Length = 169
Score = 97.1 bits (231), Expect = 3e-19
Identities = 42/109 (38%), Positives = 65/109 (59%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E+ + P YD++RYGV F ASPR +DV++V G ++ M AL+ ++ P+P+WV+
Sbjct: 58 CELEIAALGNPFYDIERYGVHFVASPRHADVLMVTGPVSRHMQAALQATWEATPEPKWVV 117
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQL 238
++GSCA ++PVD +PGCPPT L+ G+L L
Sbjct: 118 AVGSCAADGGEFGVNYASCGAVGNVLPVDAVIPGCPPTPTDLVRGLLSL 166
>UniRef50_A0UXP2 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=2; Bacteria|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Clostridium
cellulolyticum H10
Length = 266
Score = 97.1 bits (231), Expect = 3e-19
Identities = 42/108 (38%), Positives = 66/108 (61%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C E+ + P D++R+G+ F ASPR +D+++V G ++ M AL K Y+ P P+ V+
Sbjct: 154 CDYEVQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVV 213
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQ 241
+ G+CA G D I+PVD+Y+PGCPP +AL+YG+L+
Sbjct: 214 AAGACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILK 261
>UniRef50_Q0W3I3 Cluster: Ech hydrogenase, subunit C; n=6; cellular
organisms|Rep: Ech hydrogenase, subunit C - Uncultured
methanogenic archaeon RC-I
Length = 157
Score = 96.3 bits (229), Expect = 5e-19
Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Frame = -3
Query: 606 RKGSLWPM---TFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMA 436
RK S W + T G C +E++ PRYD+ R+GV +P+ +DVM+V G +T K
Sbjct: 8 RKKSPWVIHVNTGGCNGCDLEILSCLTPRYDISRFGVYSTGNPKHADVMLVVGPVTLKYK 67
Query: 435 PALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALL 256
+ +Y+QMPDP+ V+++GSCA+ D+++PVD+YVPGC E ++
Sbjct: 68 EIITNLYNQMPDPKVVMAVGSCASTGAIYQGCYGTCGSLDKVIPVDVYVPGCNCRPEGII 127
Query: 255 YGVL 244
G++
Sbjct: 128 DGLV 131
>UniRef50_A1RWL1 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Thermofilum
pendens (strain Hrk 5)
Length = 245
Score = 95.9 bits (228), Expect = 7e-19
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E+ P +D++R GV SPR +DV++V G +T + P L+ Y+ P P V+
Sbjct: 30 CDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTGPVTRQFLPVLKATYEAAPKPCVVV 89
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQ----LQKKIKRM 217
+ G+CA G D+++PVD+Y+PGCPP A+L+GV L++K+KR
Sbjct: 90 ACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCPPRPHAILHGVAVALDILEQKVKRS 149
Query: 216 KT 211
+T
Sbjct: 150 ET 151
>UniRef50_Q8PY02 Cluster: Formate hydrogenlyase subunit 7; n=3;
Methanomicrobia|Rep: Formate hydrogenlyase subunit 7 -
Methanosarcina mazei (Methanosarcina frisia)
Length = 170
Score = 94.7 bits (225), Expect = 2e-18
Identities = 43/112 (38%), Positives = 70/112 (62%)
Frame = -3
Query: 558 VEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISM 379
+E+ ++ P YD++R+G+ F ASPR +DV++V G +T MA A +K Y+ MP P++VI++
Sbjct: 58 MEISNLGNPHYDVERFGISFVASPRHADVLLVTGAVTLNMAEAAKKTYEAMPYPKYVIAV 117
Query: 378 GSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIK 223
G A G D+I+PVD+ +PG PP+ + +L G+ L KK +
Sbjct: 118 GDDACDGGIYKGSYAVLGGVDKILPVDVKIPGNPPSPKEILQGIFALVKKAR 169
>UniRef50_Q0W2C0 Cluster: Hydrogenase, small subunit-like protein;
n=2; cellular organisms|Rep: Hydrogenase, small
subunit-like protein - Uncultured methanogenic archaeon
RC-I
Length = 247
Score = 94.7 bits (225), Expect = 2e-18
Identities = 41/107 (38%), Positives = 65/107 (60%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C VE+ ++ YD++R+G+ ASPR +D ++V G +T M L + Y+ PDP+ VI
Sbjct: 130 CEVEVNSLSNAIYDIERFGLHIVASPRHADALLVTGPVTRNMERGLMQSYNATPDPKMVI 189
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVL 244
+MG+CA G D +VPVD+Y+PGCPP +A++ G++
Sbjct: 190 AMGACAITGGIFRDSYAVYNGVDALVPVDVYIPGCPPRPQAIIQGIM 236
>UniRef50_Q7M874 Cluster: HYDROGENASE-Ni,Fe-hydrogenase III small
subunit; n=3; cellular organisms|Rep:
HYDROGENASE-Ni,Fe-hydrogenase III small subunit -
Wolinella succinogenes
Length = 276
Score = 93.1 bits (221), Expect = 5e-18
Identities = 42/131 (32%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLAC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 460
+L+ L + GR S++ + G +C C +E+ P +D +R+G A+PR +D+++
Sbjct: 19 KLELLKHIGRSFSVYRIDCG-SCNGCEIEIFAAITPLWDPERFGFKLVANPRHADILLCT 77
Query: 459 GTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGC 280
G +T +M L + Y+ PDP+ V+++G+C + G D+I+PVD+Y+PGC
Sbjct: 78 GPVTRQMYYPLLRAYEAAPDPKLVVALGACGSTGGIFYDAYSVLSGIDKIIPVDVYIPGC 137
Query: 279 PPTAEALLYGV 247
PP +++YG+
Sbjct: 138 PPHPASIIYGL 148
>UniRef50_A1ASR2 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=3; cellular organisms|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Pelobacter propionicus
(strain DSM 2379)
Length = 179
Score = 93.1 bits (221), Expect = 5e-18
Identities = 38/106 (35%), Positives = 62/106 (58%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E++++ P YD++R+G+ SPR +DVM+ G AL++ Y MP P+ V
Sbjct: 27 CDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTGKALQRAYAAMPGPKLVF 86
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGV 247
++GSCA ++++PV+ YVPGCPP EA+++GV
Sbjct: 87 AIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAIIWGV 132
>UniRef50_P16433 Cluster: Formate hydrogenlyase subunit 7; n=57;
Bacteria|Rep: Formate hydrogenlyase subunit 7 -
Escherichia coli (strain K12)
Length = 255
Score = 93.1 bits (221), Expect = 5e-18
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKM-APALRKVYDQMPDPRWV 388
C +E+ +P +D +R+G+ SPR +D+++ G +T M +PALR + PDP+
Sbjct: 51 CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPDPKIC 109
Query: 387 ISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYG 250
IS G+C N G D+IVPVD+Y+PGCPPT A LYG
Sbjct: 110 ISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
>UniRef50_Q57936 Cluster: Uncharacterized protein MJ0516; n=15;
Euryarchaeota|Rep: Uncharacterized protein MJ0516 -
Methanococcus jannaschii
Length = 148
Score = 92.3 bits (219), Expect = 9e-18
Identities = 40/123 (32%), Positives = 75/123 (60%)
Frame = -3
Query: 582 TFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 403
T G C +E++ APRYD+++YG+ +PR++DV++V G +T + A L+++Y++ P
Sbjct: 18 TGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTP 77
Query: 402 DPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIK 223
+P+ V+++G+CA G D+++PVD +PGCPP ++ +L++ K
Sbjct: 78 EPKIVVAVGACA-LSGGIFKEGHVVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPKAI 136
Query: 222 RMK 214
M+
Sbjct: 137 AMR 139
>UniRef50_A7CX02 Cluster: NADH ubiquinone oxidoreductase 20 kDa
subunit; n=1; Opitutaceae bacterium TAV2|Rep: NADH
ubiquinone oxidoreductase 20 kDa subunit - Opitutaceae
bacterium TAV2
Length = 294
Score = 91.9 bits (218), Expect = 1e-17
Identities = 41/123 (33%), Positives = 71/123 (57%)
Frame = -3
Query: 576 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDP 397
G C ++ + +D+ R+G+ F ASPR +D +++ G ++ M AL+K +D +PDP
Sbjct: 153 GCNACEADVNVLGTIGWDLSRFGIQFVASPRHADGLLITGPVSQGMELALKKTWDAVPDP 212
Query: 396 RWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKRM 217
+ VI+ G+CA G +VPVD+Y+PGCPP +L G+L+L +++
Sbjct: 213 KLVIATGACAISGGPFAGNPQILGGASAVVPVDLYIPGCPPHPLTILDGLLRLLGRLEEQ 272
Query: 216 KTI 208
K++
Sbjct: 273 KSL 275
>UniRef50_UPI0000E81815 Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 187
Score = 91.5 bits (217), Expect = 2e-17
Identities = 41/60 (68%), Positives = 45/60 (75%)
Frame = -3
Query: 372 CANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKRMKTIQVWYR 193
CAN GCDRIVPVDIYVPGCPPTAEALLYG+LQLQKKIKR + +Q+WYR
Sbjct: 127 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERKLQIWYR 186
Score = 33.5 bits (73), Expect = 4.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLACC 562
+LDDL+NW R+ SLWP C
Sbjct: 86 KLDDLINWARRTSLWPSMLAQQNC 109
>UniRef50_A5FR05 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=12; cellular organisms|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Dehalococcoides sp.
BAV1
Length = 155
Score = 91.5 bits (217), Expect = 2e-17
Identities = 39/107 (36%), Positives = 64/107 (59%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E++ P YD++R+G+V +P+ SDV++V G + LR +Y+QMP+P+ VI
Sbjct: 25 CDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVLRNLYEQMPEPKVVI 84
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVL 244
+G+C G D+++PVD+YVPGC EA++ GV+
Sbjct: 85 VIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGVV 131
>UniRef50_Q0W6T1 Cluster: [NiFe]-hydrogenase, small subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep:
[NiFe]-hydrogenase, small subunit - Uncultured
methanogenic archaeon RC-I
Length = 135
Score = 90.6 bits (215), Expect = 3e-17
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Frame = -3
Query: 576 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDP 397
G C +E++ PRYD++R GV SPR +DV++V G + P L +VY Q P+P
Sbjct: 17 GCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPLHTKPFLERVYAQTPEP 76
Query: 396 RWVISMGS--CANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIK 223
+ VI++G+ C+ D+I+PVD+ +PGCPP EA++ G++ K+
Sbjct: 77 KRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPKPEAIMEGII----KVL 132
Query: 222 RMK 214
RMK
Sbjct: 133 RMK 135
>UniRef50_A5FPI3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=4; cellular organisms|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Dehalococcoides sp.
BAV1
Length = 171
Score = 89.8 bits (213), Expect = 5e-17
Identities = 40/113 (35%), Positives = 70/113 (61%)
Frame = -3
Query: 558 VEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISM 379
+E+ +++ P YD++R+G+ F ASPR +D++IV G +T MA A+RK +D MP P+ VI++
Sbjct: 58 IELNNLSNPYYDVERFGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPKLVIAL 117
Query: 378 GSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKR 220
G A G D+I+PV++ +PG PP ++ +L L + +++
Sbjct: 118 GDDACSGGIASGGYGVLGGVDKILPVNLKIPGNPPEPAQIINSLLGLMQSLRK 170
>UniRef50_A6Q6W5 Cluster: Ni-Fe hydrogenase, small subunit HycG;
n=2; unclassified Epsilonproteobacteria|Rep: Ni-Fe
hydrogenase, small subunit HycG - Sulfurovum sp. (strain
NBC37-1)
Length = 168
Score = 89.4 bits (212), Expect = 6e-17
Identities = 40/113 (35%), Positives = 63/113 (55%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C E ++ P YD++R G+ F ASPR +DVM++ G +T M P + Y Q+P+P+WVI
Sbjct: 56 CEAECNALSNPYYDLERLGIYFVASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEPKWVI 115
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 226
++G+C +PV ++PGCPP ++ G+L+ KKI
Sbjct: 116 TLGACPVMEAPFEKTFAVKAPAADHLPVAHHIPGCPPEPLEIIRGLLEFLKKI 168
>UniRef50_Q7WT80 Cluster: EchC; n=2; Deltaproteobacteria|Rep: EchC -
Desulfovibrio gigas
Length = 147
Score = 89.0 bits (211), Expect = 8e-17
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Frame = -3
Query: 624 DLLNWGRKGSLWPMTFGLA-C--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 454
D + R S W M F C C +E + P +G+V +P+ +D++IV+GT
Sbjct: 6 DFIKSSRIKSPWLMHFDCGFCNGCDIETLACLDPHLRRGTFGIVNVGNPKHADILIVSGT 65
Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
+ ++ L +Y+QMP P+ V+++G+C G D+++PVD YVPGCPP
Sbjct: 66 VNHRNKKVLANLYEQMPHPKVVVAIGACGLSGGVFREAPNVVGGIDKVIPVDAYVPGCPP 125
Query: 273 TAEALLYG-VLQLQK 232
EA++ G VL LQK
Sbjct: 126 KPEAIIDGVVLGLQK 140
>UniRef50_Q9UYN6 Cluster: Hydrogenase 4, component I or formate
hydrogen lyase, subunit 7; n=1; Pyrococcus abyssi|Rep:
Hydrogenase 4, component I or formate hydrogen lyase,
subunit 7 - Pyrococcus abyssi
Length = 271
Score = 89.0 bits (211), Expect = 8e-17
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 15/132 (11%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM-PDPRWV 388
C +E++ + P YD++R G+ +PR +D +++ G LT + A++K Y+ M P PR V
Sbjct: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
Query: 387 ISMGSCA-------------NXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGV 247
+++G+CA N G + +VPVD+Y+PGCPP+ E +LYG+
Sbjct: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
Query: 246 LQLQK-KIKRMK 214
QL K KRMK
Sbjct: 140 AQLLGIKEKRMK 151
>UniRef50_A7BSF1 Cluster: NADH-plastoquinone oxidoreductase subunit
K; n=1; Beggiatoa sp. PS|Rep: NADH-plastoquinone
oxidoreductase subunit K - Beggiatoa sp. PS
Length = 250
Score = 87.4 bits (207), Expect = 3e-16
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
Frame = -3
Query: 630 LDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTL 451
+D + + R SL+ + + C A+E+ R+D +R G+ +PRQ+D++++ G L
Sbjct: 34 IDRIADRCRSRSLFILHYCTGCGAIELPPTITSRFDAERLGIQPMVTPRQADILLITGYL 93
Query: 450 TNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPT 271
+ K + Y+QM P++VI MGSC +PVD+Y+ GC P
Sbjct: 94 SVKTLKRVILSYEQMQAPKYVIGMGSCTINGGMYWHSYATVKRLQEYMPVDMYMAGCMPR 153
Query: 270 AEALLYGVLQLQKKIKRMKTI--QVWYRN 190
EA+L G LQL I + K Q +YRN
Sbjct: 154 PEAILEGFLQLIDNIDKGKATAWQEYYRN 182
>UniRef50_Q58758 Cluster: Uncharacterized protein MJ1363; n=9;
Euryarchaeota|Rep: Uncharacterized protein MJ1363 -
Methanococcus jannaschii
Length = 151
Score = 87.0 bits (206), Expect = 3e-16
Identities = 40/127 (31%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Frame = -3
Query: 582 TFGLACCAVEMMH-IAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 406
T G C +E+++ I +P YD ++Y V +PR++D+++V G +T +A +LRK+Y+++
Sbjct: 21 TGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVAESLRKIYEKI 80
Query: 405 PDPRWVISMGSCA-------NXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGV 247
P+P+ V+++G+CA N + I+PVD+ VPGC P E ++ G+
Sbjct: 81 PEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIIAGI 140
Query: 246 LQLQKKI 226
++ K+
Sbjct: 141 VKALPKV 147
>UniRef50_P72317 Cluster: CooL; n=8; Bacteria|Rep: CooL -
Rhodospirillum rubrum
Length = 142
Score = 85.8 bits (203), Expect = 8e-16
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Frame = -3
Query: 564 CAVEMMHIAA-PRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWV 388
C VE+ A PRYD++R G + SP+ +D+++V G LT ++ + +VY+++PDP+
Sbjct: 25 CDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLTARVKDKVLRVYEEIPDPKVT 84
Query: 387 ISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGV 247
+++G C DR +PVD+ VPGCPP +A++ G+
Sbjct: 85 VAIGVCPISGGVFRESYSIVGPIDRYLPVDVNVPGCPPRPQAIIEGI 131
>UniRef50_A5FW47 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit precursor; n=1; Acidiphilium cryptum JF-5|Rep:
NADH ubiquinone oxidoreductase, 20 kDa subunit precursor
- Acidiphilium cryptum (strain JF-5)
Length = 264
Score = 85.4 bits (202), Expect = 1e-15
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C E+ + P Y++ R G+ F SPR +D+++V G +T M LR+ ++ MP PRWV+
Sbjct: 141 CESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRAMLEPLRRTWEAMPAPRWVM 200
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQ-LQKKIKRMK 214
+ G+CA G + +PVD+Y+PGCPP A++ +L L ++ +R++
Sbjct: 201 ASGTCA-VSGGIAPGGPCLSGLEEALPVDLYLPGCPPNPAAIIEALLMFLGRRAQRVR 257
>UniRef50_A6DB47 Cluster: HYDROGENASE-Ni,Fe-hydrogenase III small
subunit; n=3; Epsilonproteobacteria|Rep:
HYDROGENASE-Ni,Fe-hydrogenase III small subunit -
Caminibacter mediatlanticus TB-2
Length = 280
Score = 84.6 bits (200), Expect = 2e-15
Identities = 36/106 (33%), Positives = 59/106 (55%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E+ P +D +R+G ASPR +D+++ G LT +M L + Y+ PDP+ VI
Sbjct: 46 CEIEIFAAITPMWDPERFGFKLVASPRHADILLCTGPLTRQMYYPLLRAYEATPDPKVVI 105
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGV 247
++G+C G D +PVD+Y+PGCPP +++G+
Sbjct: 106 AVGACGCTGGIFHDSYAVWSGIDSTLPVDVYIPGCPPHPATIIHGL 151
>UniRef50_Q12F15 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=11; Proteobacteria|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Polaromonas sp. (strain
JS666 / ATCC BAA-500)
Length = 181
Score = 83.4 bits (197), Expect = 4e-15
Identities = 36/107 (33%), Positives = 60/107 (56%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E+ + P Y+++ G+ F ASPR +D+++V G ++ M ALR+ YD P+P+ V+
Sbjct: 57 CELEIHALNNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMDEALRRTYDATPEPKLVV 116
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVL 244
++G C ++PVD+ VPGCPP +L G+L
Sbjct: 117 AVGDCGCTGGIFGDSYASCGRVANVIPVDVTVPGCPPPPIEILRGIL 163
>UniRef50_Q24ST9 Cluster: Formate hydrogenlyase subunit 7; n=2;
Desulfitobacterium hafniense|Rep: Formate hydrogenlyase
subunit 7 - Desulfitobacterium hafniense (strain Y51)
Length = 155
Score = 80.2 bits (189), Expect = 4e-14
Identities = 38/110 (34%), Positives = 61/110 (55%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C EM + P YD+ R+G+ F ASPR +D+++ G ++ + A Y+ P+P+ +I
Sbjct: 46 CDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQAALATYEGTPNPKRII 105
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQ 235
++G CA G +PVDI +PGCPP+ + LL +LQL+
Sbjct: 106 AVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCPPSPDELLKVLLQLK 155
>UniRef50_A2YHL1 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 135
Score = 77.8 bits (183), Expect = 2e-13
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = -3
Query: 573 LACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 421
LA CAVEMMH A YD DR+ V+FR SPRQSD MI+ GTLTNKM PAL K
Sbjct: 58 LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGK 108
>UniRef50_A4YGN5 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Metallosphaera sedula DSM 5348|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit -
Metallosphaera sedula DSM 5348
Length = 203
Score = 77.8 bits (183), Expect = 2e-13
Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Frame = -3
Query: 594 LWPMTFGLAC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 421
L+P+ G +C C +E+ I++P+YDM R+G+ F +P+ +D +++ G L +M +R+
Sbjct: 86 LYPLDAG-SCGGCNLELRLISSPQYDMTRFGIFFTNTPKHADALLIMGNLGKRMEEVIRR 144
Query: 420 VYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQ 241
YD +P P+ VI +G+CA + D+ VPGCPPT ++L +++
Sbjct: 145 AYDVIPSPKLVILLGTCAISGGVTGIPPD--------IRGDVIVPGCPPTPASILDALIK 196
>UniRef50_A7HGW9 Cluster: NADH ubiquinone oxidoreductase 20 kDa
subunit; n=12; cellular organisms|Rep: NADH ubiquinone
oxidoreductase 20 kDa subunit - Anaeromyxobacter sp.
Fw109-5
Length = 256
Score = 77.4 bits (182), Expect = 3e-13
Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C E+ ++D+ R+G+ F ASPR +D ++V G ++ M AL+K Y+ +P PR VI
Sbjct: 140 CEAELNAAGNIQFDLGRFGIQFVASPRHADGIVVTGPVSENMRLALQKTYEAVPAPRLVI 199
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVP---VDIYVPGCPPTAEALLYGVLQL 238
++G+CA G +P VD+YVPGCPP L G+L++
Sbjct: 200 AVGACAISGGVFRESPVSCGGAAAALPGVRVDLYVPGCPPHPITFLDGMLRM 251
>UniRef50_A1SQ82 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=10; Actinomycetales|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Nocardioides sp.
(strain BAA-499 / JS614)
Length = 162
Score = 77.4 bits (182), Expect = 3e-13
Identities = 37/103 (35%), Positives = 53/103 (51%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E+ P YD +RYG ASPR +DV++V G +T+ M LR+ + P PR V+
Sbjct: 51 CEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNMLEPLRRTVEATPRPRLVL 110
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALL 256
++G CA V VD+ VPGCPP A++
Sbjct: 111 AVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIV 153
>UniRef50_Q21TB3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Rhodoferax ferrireducens T118|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
Length = 254
Score = 74.9 bits (176), Expect = 1e-12
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Frame = -3
Query: 576 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDP 397
G + C +E+ ++ +D+ RYG+ ASPR +D ++++G +T MA AL+ +D +P+P
Sbjct: 137 GCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALVLSGPITRNMAQALQICWDAIPEP 196
Query: 396 RWVISMGSCA-NXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQL 238
+ VI++G+CA + D P +YVPGCP + G++ L
Sbjct: 197 KLVIAVGACAISGGVFADSDALDRQFLDNFKPA-LYVPGCPAHPLTFISGIMDL 249
>UniRef50_Q978D5 Cluster: Formate hydrogenlyase subunit 2; n=2;
Thermoplasmatales|Rep: Formate hydrogenlyase subunit 2 -
Thermoplasma volcanium
Length = 222
Score = 70.1 bits (164), Expect = 4e-11
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Frame = -3
Query: 606 RKGSLWPMTFGLAC--CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAP 433
R ++P+ G AC C +E + I +P+YD +R G+ +PR +D +IV G +T M
Sbjct: 87 RSFHVFPIDSG-ACGACNMEFLSIFSPQYDANRLGIFMVNTPRYADALIVMGVMTPGMKE 145
Query: 432 ALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLY 253
AL + Y+ MP+P+ VI+MG+CA DR ++ + GCPP+ L+
Sbjct: 146 ALDRAYEAMPEPKLVIAMGACA-----VTGGIMGENPLDR-EKYNVEIAGCPPSPYTLI- 198
Query: 252 GVLQLQKKIKR 220
L K KR
Sbjct: 199 AALNAAMKDKR 209
>UniRef50_A5FW77 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Acidiphilium cryptum JF-5|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Acidiphilium
cryptum (strain JF-5)
Length = 164
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/109 (29%), Positives = 52/109 (47%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E+ R M +G+ R +D+++V G T +A A+RK M PR+V+
Sbjct: 39 CEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLAEAVRKSLAGMAPPRFVV 98
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQL 238
+ G CA G ++PVD+ + GCPP +L G++ L
Sbjct: 99 AAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILAGLVAL 147
>UniRef50_Q0BPG7 Cluster: Formate hydrogenlyase subunit 7; n=1;
Granulibacter bethesdensis CGDNIH1|Rep: Formate
hydrogenlyase subunit 7 - Granulobacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1)
Length = 174
Score = 63.3 bits (147), Expect = 5e-09
Identities = 31/113 (27%), Positives = 57/113 (50%)
Frame = -3
Query: 576 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDP 397
G + C +E+ + A + R+G+ F SP +D++++ G + + A+ + ++ MP P
Sbjct: 55 GGSACLLELEALRAAPGLLARHGLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGP 114
Query: 396 RWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQL 238
RW I++G A + I P D+ +PG PP A+ +L G+ L
Sbjct: 115 RWAIAVGDGAAGDGLLRGSYASTGNMEEI-PFDLVIPGSPPAADTILSGLRAL 166
>UniRef50_A6DAC3 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Caminibacter mediatlanticus TB-2|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Caminibacter
mediatlanticus TB-2
Length = 140
Score = 60.9 bits (141), Expect = 3e-08
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = -3
Query: 564 CAVEMM-HIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWV 388
C VE+ + + R+D+ + G + + +D+ ++ G +T + P L++V P V
Sbjct: 20 CDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFLKEVIKNHKKPYVV 79
Query: 387 ISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKR 220
IS+G+C+ D V VD+ V GCPP +A+L GV +KR
Sbjct: 80 ISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGVKTAIDILKR 135
>UniRef50_A3ETD3 Cluster: Ni,Fe-hydrogenase III small subunit; n=1;
Leptospirillum sp. Group II UBA|Rep: Ni,Fe-hydrogenase
III small subunit - Leptospirillum sp. Group II UBA
Length = 169
Score = 60.1 bits (139), Expect = 4e-08
Identities = 32/111 (28%), Positives = 55/111 (49%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E+ + Y +R G+ F ASPR +D+++V G ++ +M L ++ M P+ V+
Sbjct: 49 CELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQPLLDTHEAMASPKTVL 108
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQK 232
++G CA G D + P VPGCPP+ +L + L +
Sbjct: 109 AVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILRALRGLSR 159
>UniRef50_UPI00015BC86C Cluster: UPI00015BC86C related cluster; n=1;
unknown|Rep: UPI00015BC86C UniRef100 entry - unknown
Length = 165
Score = 59.3 bits (137), Expect = 8e-08
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C E+ ++ YD++R+G+ F ASP+ DV+ + G +T M L P+P+ +I
Sbjct: 53 CEYELTALSNVFYDIERFGIKFVASPKHVDVLTITGPITRNMYKPLLDAIQNTPNPKVII 112
Query: 384 SMGSCA-NXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQ 241
++G C+ + D + I + GCPP ++ G+L+
Sbjct: 113 AIGDCSIDGGLFKGAYGIVGGLKDINIEPHILIRGCPPHPRDIISGILK 161
>UniRef50_Q6L0U2 Cluster: Formate hydrogenlyase subunit 7; n=3;
cellular organisms|Rep: Formate hydrogenlyase subunit 7
- Picrophilus torridus
Length = 202
Score = 59.3 bits (137), Expect = 8e-08
Identities = 31/109 (28%), Positives = 51/109 (46%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C E+ I+ P YD+ RY + F +PR +D +I++G M + MP P ++I
Sbjct: 100 CNSELFSISIPEYDLTRYHIFFTNTPRHADAIILSGIYNESMKDVIDNALGAMPKPGYLI 159
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQL 238
+G+CA G + + +PGCPP +L G+ +L
Sbjct: 160 LLGACA--------LSGGIIGSGHEIKAVLEIPGCPPNPYTILKGLRRL 200
>UniRef50_A0LSU0 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Acidothermus cellulolyticus 11B|Rep: NADH
ubiquinone oxidoreductase, 20 kDa subunit - Acidothermus
cellulolyticus (strain ATCC 43068 / 11B)
Length = 269
Score = 51.2 bits (117), Expect = 2e-05
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Frame = -3
Query: 555 EMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMG 376
E++ + P YD+ R G+ F ASPR +DV++V G + MA L + P P VI+ G
Sbjct: 141 EVLALLNPVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAG 200
Query: 375 SCA-NXXXXXXXXXXXXXGCDRI-----------------VPVDIYVPGCPPTAEALLYG 250
+ A + D I V VDI+VPG PPT ALL+
Sbjct: 201 TDAISGGLVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTPFALLHA 260
Query: 249 VL 244
+L
Sbjct: 261 LL 262
>UniRef50_Q5FU78 Cluster: Putative uncharacterized protein; n=1;
Gluconobacter oxydans|Rep: Putative uncharacterized
protein - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 161
Score = 50.8 bits (116), Expect = 3e-05
Identities = 27/113 (23%), Positives = 55/113 (48%)
Frame = -3
Query: 576 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDP 397
G C +E+ + + +++ G V + P +D +++ G +T A + +V+ MP
Sbjct: 46 GCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEMVDRVWRAMPPG 105
Query: 396 RWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQL 238
R +I++G+CA G + + PV + GCPP+ + +L + +L
Sbjct: 106 RSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRALQEL 158
>UniRef50_A2XI26 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 581
Score = 46.4 bits (105), Expect = 6e-04
Identities = 16/22 (72%), Positives = 21/22 (95%)
Frame = -3
Query: 633 RLDDLLNWGRKGSLWPMTFGLA 568
++DDL+NW R+GS+WPMTFGLA
Sbjct: 484 KVDDLMNWARRGSIWPMTFGLA 505
>UniRef50_Q6A6I9 Cluster: NADH dehydrogenase subunit; n=1;
Propionibacterium acnes|Rep: NADH dehydrogenase subunit
- Propionibacterium acnes
Length = 132
Score = 42.7 bits (96), Expect = 0.007
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Frame = -3
Query: 618 LNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKM 439
++W GS++ + LACC VE AA + + +P V++V+GT+T +
Sbjct: 4 IDWFADGSVYVVDLALACCGVESG--AAVLANAPVREEIPDGAP---IVVLVSGTVTTGL 58
Query: 438 APALRKVYDQMP--DPRWVISMGSCANXXXXXXXXXXXXXGC-DRIVPVDIYVPGCPPTA 268
AP + ++ P V++ G+CA G D V D ++PGCPP
Sbjct: 59 APVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPPGP 118
Query: 267 EAL 259
E L
Sbjct: 119 ETL 121
>UniRef50_A7QEP9 Cluster: Chromosome chr16 scaffold_86, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr16 scaffold_86, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 98
Score = 37.5 bits (83), Expect = 0.27
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -3
Query: 444 KMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVP 286
KM P L ++Y Q+P+ ++VI+ G+C G D++ PVD+Y P
Sbjct: 2 KMTPPLMRLYKQIPELKYVIATGTCM-ITEDILIVYSTVRGVDKLTPVDVYSP 53
>UniRef50_Q6XQK2 Cluster: HoxY; n=5; Proteobacteria|Rep: HoxY -
Thiocapsa roseopersicina
Length = 180
Score = 36.7 bits (81), Expect = 0.47
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = -3
Query: 312 IVPVDIYVPGCPPTAEALLYGVLQL 238
+V VD++VPGCPP+A+A+ Y + +L
Sbjct: 140 VVGVDVFVPGCPPSADAIWYVLSEL 164
>UniRef50_Q44515 Cluster: Hydrogenase small subunit; n=31;
Bacteria|Rep: Hydrogenase small subunit - Anabaena
variabilis
Length = 205
Score = 35.5 bits (78), Expect = 1.1
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3
Query: 312 IVPVDIYVPGCPPTA 268
IVPVDIY+PGCPP+A
Sbjct: 164 IVPVDIYLPGCPPSA 178
>UniRef50_A0LLU1 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=1; Syntrophobacter fumaroxidans MPOB|Rep:
NADH ubiquinone oxidoreductase, 20 kDa subunit -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 184
Score = 35.5 bits (78), Expect = 1.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 315 RIVPVDIYVPGCPPTAEALLYGVLQLQK 232
+++PVDI++PGCPP E + ++ L K
Sbjct: 143 QVIPVDIFLPGCPPDPERIWAAIVALLK 170
>UniRef50_Q59113 Cluster: Hydrogenase small beta subunit; n=1;
Acetomicrobium flavidum|Rep: Hydrogenase small beta
subunit - Acetomicrobium flavidum
Length = 179
Score = 35.1 bits (77), Expect = 1.4
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 318 DRIVPVDIYVPGCPPTAEALLY 253
D V VD+YVPGCPP A+ + Y
Sbjct: 137 DYEVKVDVYVPGCPPDADTIYY 158
>UniRef50_Q0FXV5 Cluster: Putative uncharacterized protein; n=1;
Fulvimarina pelagi HTCC2506|Rep: Putative
uncharacterized protein - Fulvimarina pelagi HTCC2506
Length = 391
Score = 34.7 bits (76), Expect = 1.9
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3
Query: 495 ASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPR 394
ASPR + + ++AG + + LR+++DQMP PR
Sbjct: 28 ASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPR 61
>UniRef50_Q85WY3 Cluster: ORF82a; n=1; Pinus koraiensis|Rep: ORF82a
- Pinus koraiensis (Korean pine)
Length = 82
Score = 34.3 bits (75), Expect = 2.5
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -3
Query: 318 DRIVPVDIYVPGCPPTAEALLYGVLQL-QKKIKRM 217
D+++PVD+Y P CP E ++ + +L ++K+ M
Sbjct: 46 DKLIPVDVYSPDCPTEPEVIIDAITKLRERKVSSM 80
>UniRef50_Q8ZL73 Cluster: Putative cytoplasmic protein; n=10;
cellular organisms|Rep: Putative cytoplasmic protein -
Salmonella typhimurium
Length = 651
Score = 33.5 bits (73), Expect = 4.4
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -3
Query: 561 AVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 406
A+E IAA + D YG+VF+ S + VA +L K PAL K D++
Sbjct: 49 AIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEV 100
>UniRef50_A5UWN9 Cluster: NADH ubiquinone oxidoreductase, 20 kDa
subunit; n=2; Roseiflexus|Rep: NADH ubiquinone
oxidoreductase, 20 kDa subunit - Roseiflexus sp. RS-1
Length = 127
Score = 33.1 bits (72), Expect = 5.8
Identities = 23/106 (21%), Positives = 46/106 (43%)
Frame = -3
Query: 564 CAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVI 385
C +E++ A D+D + A+P ++DV+++ G LT A + ++ +I
Sbjct: 15 CDLEVIAALAAAADID-----WAATPHEADVLLLTGPLTTDTKKAFMALLQELDHRAPII 69
Query: 384 SMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGV 247
++G CA + V + + GCPPT ++ +
Sbjct: 70 AVGRCAIDGHPFGRGGVAVIP---NLTVHLSLDGCPPTPTQIVEAI 112
>UniRef50_Q7NHB5 Cluster: Magnesium protoporphyrin IX chelatase
subunit H; n=5; Cyanobacteria|Rep: Magnesium
protoporphyrin IX chelatase subunit H - Gloeobacter
violaceus
Length = 1327
Score = 32.7 bits (71), Expect = 7.6
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -3
Query: 318 DRIVPVDIYVPGCPPTA-EAL--LYGVLQLQKKIKRMK 214
DR+VP D++V G PPTA EA+ L GV + K M+
Sbjct: 748 DRLVPCDLHVVGTPPTATEAIDTLVGVASFDRPEKEME 785
>UniRef50_A5Z5F5 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 849
Score = 32.7 bits (71), Expect = 7.6
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 615 NWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVM--IVAGTLTNK 442
NW +KG + + L+ V + + YD + Y +F AS Q D M ++ T N
Sbjct: 438 NW-KKGLIVMFSIALSMVVVNYIVMLVQGYDFESYRNIFLASDFQLDQMTDTLSNTNFNG 496
Query: 441 MAPALRKVYDQMPD 400
+ P ++++ ++ P+
Sbjct: 497 ITPEIKEILNKCPE 510
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,279,229
Number of Sequences: 1657284
Number of extensions: 12525802
Number of successful extensions: 27782
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 26621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27630
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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