Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30846
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    25   0.70 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.8  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   3.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.5  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 194 LYHT*IVFILLIFFCSCSTPYSKASAV 274
           +Y T  +F+LLIF    +TP +  S V
Sbjct: 243 IYTTYTIFLLLIFGSGSATPENNVSVV 269


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 280 STYS*SFTIWCTATTKKNQENENYSS 203
           S Y  S    C   + + Q+N NYSS
Sbjct: 66  SPYDASVAAACKLYSSEGQQNSNYSS 91


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 555 EMMHIAAPRYDMDRYGVVFRASPRQSDVM 469
           E   I    Y M+ + VVF  S +  DVM
Sbjct: 258 EFDQIVNVAYRMETWNVVFNGSRKNLDVM 286


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/30 (20%), Positives = 15/30 (50%)
 Frame = +3

Query: 9   FFFFGSTILYSVXXXXXXXXXXXXCLYYEY 98
           ++F+ + I++++            C+YY Y
Sbjct: 213 YYFYSAFIIFTIHLLFYCVLIILLCIYYFY 242


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 570 ACCAVEMMHIAAPRYDMDRYGVVF-RASPRQSDVMIVAG 457
           AC +  MM   A RYD+    ++F    P   D   +AG
Sbjct: 393 ACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAG 431


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,998
Number of Sequences: 336
Number of extensions: 3761
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)