BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30846 (635 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 32 0.080 SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 1.7 SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 26 4.0 SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 6.9 >SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 31.9 bits (69), Expect = 0.080 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = -3 Query: 504 VFRASPRQSDVMIVAGTLTNKMAPALRK 421 VFRA+P Q VM+ + TL+N++ P +K Sbjct: 222 VFRATPPQKQVMMFSATLSNEIRPICKK 249 >SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar membrane transporter Hmt1|Schizosaccharomyces pombe|chr 3|||Manual Length = 830 Score = 27.5 bits (58), Expect = 1.7 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = -1 Query: 422 KCTTKCLILDGLFQWVVVLMEVAITTIHTLS*EDAIVLYQLTYMYP-DVHLQLKLYYMVY 246 K T CLIL LF W++VL+ A + + + + Y+L+ +Y + + + ++VY Sbjct: 87 KTTVVCLILFLLF-WIIVLISCADSKALPKNADSILKAYRLSVLYVWAIDIVFETIFIVY 145 >SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 679 Score = 26.2 bits (55), Expect = 4.0 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -3 Query: 630 LDDLLNWGRKGSLWPMTFGLACC 562 LD W KG+ W ++ G+ CC Sbjct: 112 LDKSQQWFGKGNAWRVSHGVYCC 134 >SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces pombe|chr 2|||Manual Length = 585 Score = 25.4 bits (53), Expect = 6.9 Identities = 12/46 (26%), Positives = 21/46 (45%) Frame = -1 Query: 140 YVVS*FQFNNKLLGILIVQALNLFYCSGVSCFYRIQYGTAKKKKKK 3 Y+V Q++ +L + L +C G C I+Y A K + + Sbjct: 423 YLVETGQYDTVFDWMLSISGLGTLFCWGSICLAHIRYRAAMKHQNR 468 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,715,564 Number of Sequences: 5004 Number of extensions: 54433 Number of successful extensions: 116 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 116 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 283719918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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