BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30846 (635 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 9e-26 SB_28877| Best HMM Match : Oxidored_q6 (HMM E-Value=5.3e-05) 80 1e-15 SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4 SB_30308| Best HMM Match : B56 (HMM E-Value=9e-08) 29 3.2 >SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 743 Score = 113 bits (273), Expect = 9e-26 Identities = 48/61 (78%), Positives = 56/61 (91%) Frame = -3 Query: 603 KGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALR 424 + SLWP+ FGLACC +EMMH AAPRYDMDR+GVVFRASPRQ DVM+V+GT+TNKMAPALR Sbjct: 567 ESSLWPLMFGLACCGIEMMHFAAPRYDMDRFGVVFRASPRQIDVMLVSGTVTNKMAPALR 626 Query: 423 K 421 + Sbjct: 627 R 627 Score = 81.8 bits (193), Expect = 4e-16 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 1/66 (1%) Frame = -3 Query: 387 ISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIK-RMKT 211 +S+ SCAN GCDRI+PVDIYVPGCPP+AEALL+GVLQLQKK++ + Sbjct: 677 LSISSCANSGGYYYHSYSVVRGCDRIIPVDIYVPGCPPSAEALLFGVLQLQKKVRLKHHP 736 Query: 210 IQVWYR 193 I +WYR Sbjct: 737 IAMWYR 742 >SB_28877| Best HMM Match : Oxidored_q6 (HMM E-Value=5.3e-05) Length = 63 Score = 80.2 bits (189), Expect = 1e-15 Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 1/61 (1%) Frame = -3 Query: 372 CANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIK-RMKTIQVWY 196 CAN GCDR++PVDIYVPGCPPTAEALLYGVLQLQKK++ + I +WY Sbjct: 2 CANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKVRLKHHPITMWY 61 Query: 195 R 193 R Sbjct: 62 R 62 >SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 843 Score = 29.5 bits (63), Expect = 2.4 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = +2 Query: 209 IVFILLIFFCSCSTPYSKASAVGGHPGTYMSTGTIRS-HP 325 ++ LI F SCS PYS S + G P Y STG + S HP Sbjct: 17 LILFTLILFASCSMPYS-WSKMFGLP-DYGSTGELLSVHP 54 >SB_30308| Best HMM Match : B56 (HMM E-Value=9e-08) Length = 142 Score = 29.1 bits (62), Expect = 3.2 Identities = 14/33 (42%), Positives = 24/33 (72%) Frame = +3 Query: 414 RTLSSKLEPFCLLKFLLQSLHQTDGEMLGILRH 512 RTLS++L +C+++FL + TD +LG+LR+ Sbjct: 62 RTLSAQLA-YCIVQFLEKDAALTDEVILGLLRY 93 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,792,466 Number of Sequences: 59808 Number of extensions: 395585 Number of successful extensions: 838 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 837 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1596754500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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