Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30846
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   9e-26
SB_28877| Best HMM Match : Oxidored_q6 (HMM E-Value=5.3e-05)           80   1e-15
SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_30308| Best HMM Match : B56 (HMM E-Value=9e-08)                     29   3.2  

>SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score =  113 bits (273), Expect = 9e-26
 Identities = 48/61 (78%), Positives = 56/61 (91%)
 Frame = -3

Query: 603 KGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALR 424
           + SLWP+ FGLACC +EMMH AAPRYDMDR+GVVFRASPRQ DVM+V+GT+TNKMAPALR
Sbjct: 567 ESSLWPLMFGLACCGIEMMHFAAPRYDMDRFGVVFRASPRQIDVMLVSGTVTNKMAPALR 626

Query: 423 K 421
           +
Sbjct: 627 R 627



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
 Frame = -3

Query: 387 ISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIK-RMKT 211
           +S+ SCAN             GCDRI+PVDIYVPGCPP+AEALL+GVLQLQKK++ +   
Sbjct: 677 LSISSCANSGGYYYHSYSVVRGCDRIIPVDIYVPGCPPSAEALLFGVLQLQKKVRLKHHP 736

Query: 210 IQVWYR 193
           I +WYR
Sbjct: 737 IAMWYR 742


>SB_28877| Best HMM Match : Oxidored_q6 (HMM E-Value=5.3e-05)
          Length = 63

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = -3

Query: 372 CANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIK-RMKTIQVWY 196
           CAN             GCDR++PVDIYVPGCPPTAEALLYGVLQLQKK++ +   I +WY
Sbjct: 2   CANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKVRLKHHPITMWY 61

Query: 195 R 193
           R
Sbjct: 62  R 62


>SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 209 IVFILLIFFCSCSTPYSKASAVGGHPGTYMSTGTIRS-HP 325
           ++   LI F SCS PYS  S + G P  Y STG + S HP
Sbjct: 17  LILFTLILFASCSMPYS-WSKMFGLP-DYGSTGELLSVHP 54


>SB_30308| Best HMM Match : B56 (HMM E-Value=9e-08)
          Length = 142

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +3

Query: 414 RTLSSKLEPFCLLKFLLQSLHQTDGEMLGILRH 512
           RTLS++L  +C+++FL +    TD  +LG+LR+
Sbjct: 62  RTLSAQLA-YCIVQFLEKDAALTDEVILGLLRY 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,792,466
Number of Sequences: 59808
Number of extensions: 395585
Number of successful extensions: 838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)