BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30846 (635 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa s... 244 5e-65 At3g12180.1 68416.m01519 cornichon family protein contains Pfam ... 28 4.5 At1g04200.1 68414.m00410 expressed protein Contains similarity t... 27 7.9 >At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial identical to NADH-ubiquinone oxidoreductase 20 kDa subunit mitochondrial [precursor] SP:Q42577 from [Arabidopsis thaliana]; contains Pfam profile: PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Length = 218 Score = 244 bits (596), Expect = 5e-65 Identities = 109/146 (74%), Positives = 120/146 (82%) Frame = -3 Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 454 ++DDL+NW R GS+WPMTFGLACCAVEMMH A RYD+DR+G++FR SPRQSD MIVAGT Sbjct: 71 KVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGT 130 Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274 LTNKMAPALRKVYDQMP+PRWVISMGSCAN GCDRIVPVDIYVPGCPP Sbjct: 131 LTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 190 Query: 273 TAEALLYGVLQLQKKIKRMKTIQVWY 196 TAEALLYG+LQLQKKI R K W+ Sbjct: 191 TAEALLYGLLQLQKKINRRKDFLHWW 216 >At3g12180.1 68416.m01519 cornichon family protein contains Pfam profile: PF03311 cornichon protein Length = 146 Score = 28.3 bits (60), Expect = 4.5 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -1 Query: 407 CLILDGLFQWVVVLMEVAITTIHTLS*EDAIVLYQLTYMYPDVHLQLKLYY 255 CL+ + WV L+ V +T H + ++ L +T ++ + + KL Y Sbjct: 61 CLLFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRY 111 >At1g04200.1 68414.m00410 expressed protein Contains similarity to gb|Z69902 from C. elegans Length = 732 Score = 27.5 bits (58), Expect = 7.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -2 Query: 613 LGEERFPLAHDLWSSLL 563 +GE+ FPLA D W+ LL Sbjct: 27 VGEKSFPLASDFWNKLL 43 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,935,274 Number of Sequences: 28952 Number of extensions: 274836 Number of successful extensions: 562 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 559 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 562 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1305036432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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