Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30846
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa s...   244   5e-65
At3g12180.1 68416.m01519 cornichon family protein contains Pfam ...    28   4.5  
At1g04200.1 68414.m00410 expressed protein Contains similarity t...    27   7.9  

>At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa
           subunit, mitochondrial identical to NADH-ubiquinone
           oxidoreductase 20 kDa subunit mitochondrial [precursor]
           SP:Q42577 from [Arabidopsis thaliana]; contains Pfam
           profile: PF01058 NADH ubiquinone oxidoreductase, 20 Kd
           subunit
          Length = 218

 Score =  244 bits (596), Expect = 5e-65
 Identities = 109/146 (74%), Positives = 120/146 (82%)
 Frame = -3

Query: 633 RLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGT 454
           ++DDL+NW R GS+WPMTFGLACCAVEMMH  A RYD+DR+G++FR SPRQSD MIVAGT
Sbjct: 71  KVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGT 130

Query: 453 LTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXGCDRIVPVDIYVPGCPP 274
           LTNKMAPALRKVYDQMP+PRWVISMGSCAN             GCDRIVPVDIYVPGCPP
Sbjct: 131 LTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 190

Query: 273 TAEALLYGVLQLQKKIKRMKTIQVWY 196
           TAEALLYG+LQLQKKI R K    W+
Sbjct: 191 TAEALLYGLLQLQKKINRRKDFLHWW 216


>At3g12180.1 68416.m01519 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 146

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 407 CLILDGLFQWVVVLMEVAITTIHTLS*EDAIVLYQLTYMYPDVHLQLKLYY 255
           CL+    + WV  L+ V +T  H +  ++   L  +T ++  +  + KL Y
Sbjct: 61  CLLFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRY 111


>At1g04200.1 68414.m00410 expressed protein Contains similarity to
           gb|Z69902 from C. elegans
          Length = 732

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 613 LGEERFPLAHDLWSSLL 563
           +GE+ FPLA D W+ LL
Sbjct: 27  VGEKSFPLASDFWNKLL 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,274
Number of Sequences: 28952
Number of extensions: 274836
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)