Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30845
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)                    28   9.0  

>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 430 CHYWLISTKCLTNTATRLFYVAVCMLR 350
           CH WLIST CL   A  +F+V V   R
Sbjct: 484 CHIWLISTVCL---AHMMFFVFVSWYR 507


>SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 528 FLH*LAKGSRNKATLFLNKSNLLERIEKTMPLIVIIG*FLQSVS 397
           FL      S ++ T   +KS    + +KT P+I +I  F+Q++S
Sbjct: 61  FLPSTTPSSSSQGTSSTSKSKKKRKSKKTTPIIAVIALFIQNIS 104


>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 459

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 551 NVQCQMSNSLVRMSNTNTD-THNHTQVTIKHSAK*TASQFITLTNIVNEKKS 703
           N    M+NS + M+N+ TD T N T++T  +S     S    +TN   + KS
Sbjct: 301 NSTTDMTNSSIEMTNSTTDVTDNTTEMT--NSTTDMKSNTTEMTNSTTDMKS 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,249,053
Number of Sequences: 59808
Number of extensions: 365065
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)