BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30845 (733 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8 SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8 SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013) 28 9.0 >SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 653 Score = 28.3 bits (60), Expect = 6.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 430 CHYWLISTKCLTNTATRLFYVAVCMLR 350 CH WLIST CL A +F+V V R Sbjct: 484 CHIWLISTVCL---AHMMFFVFVSWYR 507 >SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 279 Score = 28.3 bits (60), Expect = 6.8 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 528 FLH*LAKGSRNKATLFLNKSNLLERIEKTMPLIVIIG*FLQSVS 397 FL S ++ T +KS + +KT P+I +I F+Q++S Sbjct: 61 FLPSTTPSSSSQGTSSTSKSKKKRKSKKTTPIIAVIALFIQNIS 104 >SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013) Length = 459 Score = 27.9 bits (59), Expect = 9.0 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 551 NVQCQMSNSLVRMSNTNTD-THNHTQVTIKHSAK*TASQFITLTNIVNEKKS 703 N M+NS + M+N+ TD T N T++T +S S +TN + KS Sbjct: 301 NSTTDMTNSSIEMTNSTTDVTDNTTEMT--NSTTDMKSNTTEMTNSTTDMKS 350 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,249,053 Number of Sequences: 59808 Number of extensions: 365065 Number of successful extensions: 801 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 797 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1962001171 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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