Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30845
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.42 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 510 KGSRNKATLFLNKSNLLERIEKTMPLIVIIG 418
           K    KATLFLN +++  RI   + ++++IG
Sbjct: 260 KSPVRKATLFLNMASVFMRIFNLICMMLLIG 290


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 200 VRGSQYALPPASRIHFDN 253
           +RG  + + P SR+ F N
Sbjct: 27  LRGPSFVMEPPSRVEFSN 44


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 200 VRGSQYALPPASRIHFDN 253
           +RG  + + P SR+ F N
Sbjct: 27  LRGPSFVMEPPSRVEFSN 44


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 639 CLIVTCVWLCVSVFVFDI 586
           C  +T   +CV VF F+I
Sbjct: 494 CWTITTPAICVGVFTFNI 511


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 639 CLIVTCVWLCVSVFVFDI 586
           C  +T   +CV VF F+I
Sbjct: 547 CWTITTPAICVGVFTFNI 564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,825
Number of Sequences: 438
Number of extensions: 3637
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)