Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30845
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30470.1 68414.m03724 SIT4 phosphatase-associated family prot...    32   0.45 
At4g38020.1 68417.m05371 tRNA/rRNA methyltransferase (SpoU) fami...    30   1.4  
At1g36000.1 68414.m04471 LOB domain family protein / lateral org...    30   1.8  
At5g11070.1 68418.m01293 expressed protein                             29   3.2  
At2g19510.1 68415.m02280 LOB domain family protein / lateral org...    27   9.7  

>At1g30470.1 68414.m03724 SIT4 phosphatase-associated family protein
           contains similarity to copper chaperone homolog CCH
           GB:AAF15286 GI:6525011 from [Glycine max]; contains Pfam
           profile PF04499: SIT4 phosphatase-associated protein
          Length = 811

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 524 KKQLRI*NLNVQCQMSNSLVRMSNTNTDTHNHTQVTIK 637
           KK LRI N+    ++SN L++++N+N +  +H Q   K
Sbjct: 436 KKPLRIGNIGHLTRISNKLLQLANSNVEIQSHLQENSK 473


>At4g38020.1 68417.m05371 tRNA/rRNA methyltransferase (SpoU) family
           protein similar to SP|P18644 rRNA
           (adenosine-2'-O-)-methyltransferase (EC 2.1.1.66)
           {Streptomyces cyaneus}; contains Pfam profile PF00588:
           SpoU rRNA Methylase (RNA methyltransferase, TrmH) family
          Length = 352

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 126 MRHCIAL*AASFFKHNYGLAIEIGKFEAHNTLYHQ--HQGFTSIILCLTL 269
           ++HC+ L  +S ++H +G  + +G          Q   QG T+ I CL L
Sbjct: 77  VKHCLKLRQSSSYRHAHGSVLVVGTIPIREVCMFQTNKQGMTTEIECLLL 126


>At1g36000.1 68414.m04471 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD5) identical to
           SP|Q9C8V8 Putative LOB domain protein 5 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 122

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 367 AVCMLRTRQDYSFCKFSQVFPYSIQFVFDN 278
           +VC+ + R    FC++++ FPY +Q  +++
Sbjct: 11  SVCITKNRNCPRFCEYAEYFPYELQSQYES 40


>At5g11070.1 68418.m01293 expressed protein
          Length = 152

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
 Frame = +1

Query: 499 PRSFCQLMQKTTQDMKFK----RPMSNVKFTC-------TNVKHEHRHTQPHTGD 630
           PRS  + ++ T Q+++ +    R  S +K TC        N  H H H+Q + GD
Sbjct: 49  PRSPYEWLKSTAQELELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGD 103


>At2g19510.1 68415.m02280 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD8) identical to
           SP|Q9ZUP0| Putative LOB domain protein 8 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana;
           identical to ASYMMETRIC LEAVES2-like protein 34
           [Arabidopsis thaliana] GI:19919039
          Length = 120

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 364 VCMLRTRQDYSFCKFSQVFPYSIQFVFDN 278
           VC+ + R    FC++++ FPY ++  +++
Sbjct: 12  VCITKNRNCPRFCEYAEYFPYELRSHYES 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,415
Number of Sequences: 28952
Number of extensions: 256154
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)