Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30844
         (742 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...   115   1e-24
UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    44   0.004
UniRef50_O54222 Cluster: EciB protein; n=2; Staphylococcus epide...    35   1.8  
UniRef50_A3VBD6 Cluster: Lysozyme; n=1; Rhodobacterales bacteriu...    35   2.4  
UniRef50_A5FMJ8 Cluster: TonB-dependent receptor; n=1; Flavobact...    34   3.2  
UniRef50_A6UNP0 Cluster: Polysaccharide biosynthesis protein pre...    33   7.4  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score =  115 bits (276), Expect = 1e-24
 Identities = 52/62 (83%), Positives = 56/62 (90%)
 Frame = +2

Query: 131 IIFILRLLDPADFVVPQSINKGPKHLYKINLKQTKGIRPTGDTSNEKQNCYYYLIPSIFI 310
           I+F++ L DPADFVVPQSINK PKHLYKINLKQTKGIR TGDTS EKQNCY+YLIP IFI
Sbjct: 16  ILFMIILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLIPRIFI 75

Query: 311 FI 316
           FI
Sbjct: 76  FI 77


>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = -2

Query: 399 LKLENGWTDLANFSLELFVEVQ 334
           LKLENGWTDLANF LEL VEVQ
Sbjct: 20  LKLENGWTDLANFGLELPVEVQ 41


>UniRef50_O54222 Cluster: EciB protein; n=2; Staphylococcus
           epidermidis|Rep: EciB protein - Staphylococcus
           epidermidis
          Length = 976

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 185 INKGPKHLYKINLKQTKGIRPTGDTSNEKQNCYYYLIPSIFIF-IYLLNLHWTSTNNSRL 361
           IN   K +Y IN  + KG+ PT        N YY ++ S++ F + L N +   + N  +
Sbjct: 238 INHKNKDIYLINFLEKKGVSPT--------NKYYQMLKSVYQFRVSLKNNYNNKSLNQLM 289

Query: 362 KLAKSVQPFSSFSETSVQQFIFIYRY 439
           K+ ++ +    F  +++ +  F+ +Y
Sbjct: 290 KINETFKKTLGFDSSNIFKVDFVNKY 315


>UniRef50_A3VBD6 Cluster: Lysozyme; n=1; Rhodobacterales bacterium
           HTCC2654|Rep: Lysozyme - Rhodobacterales bacterium
           HTCC2654
          Length = 314

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = -2

Query: 651 HLNSDPLAISQVILLDDSCDISALYRYLLKDLVIRRLTSRASLLKVPTRR*V*YTRWTLT 472
           H++  P+ +  VI ++ + D+   +  L +   ++ LT  +   ++ T R   +T WTL 
Sbjct: 160 HIDGKPVTMGMVITMEQAMDLLDEHMRLYRTFYMKALTEESRRTRLNTPRDCAFTSWTLN 219

Query: 471 *GSG 460
            G G
Sbjct: 220 IGGG 223


>UniRef50_A5FMJ8 Cluster: TonB-dependent receptor; n=1;
           Flavobacterium johnsoniae UW101|Rep: TonB-dependent
           receptor - Flavobacterium johnsoniae UW101
          Length = 748

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 335 WTSTNNSRLKLAKSVQPFSSFSETSVQQFIFIY 433
           W STN   + L KSV  F SF  +SV+  I++Y
Sbjct: 600 WNSTNTISMNLTKSVDDFYSFEMSSVKPQIYLY 632


>UniRef50_A6UNP0 Cluster: Polysaccharide biosynthesis protein
           precursor; n=1; Methanococcus vannielii SB|Rep:
           Polysaccharide biosynthesis protein precursor -
           Methanococcus vannielii SB
          Length = 427

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 263 NEKQNCYYYLIP--SIFIFIYLLNLHWTSTNNSRLKLAKSVQPFSSFSETSVQQFIFI 430
           NE  N Y+YLIP    FI IY L ++W+      L ++K+    S F   S   F F+
Sbjct: 117 NEHLNQYWYLIPIGVSFIGIYSLFMYWSFRKKEYLAISKTTISQSFFGNISKIGFGFL 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,608,910
Number of Sequences: 1657284
Number of extensions: 13881543
Number of successful extensions: 27722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27710
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)