Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30844
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    30   1.7  
05_02_0072 - 6334613-6335215                                           29   5.1  
03_02_0868 + 11937652-11937757,11938097-11938671                       28   9.0  

>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 164 DFVVPQSINKGPKHLYKINLKQTKGIRPTGDTSNEKQNCYYYLIPSIFIFIYLLNLHW 337
           DF++P  +   P  L  +++    G      T +EK   Y YL P + I   +L + W
Sbjct: 310 DFLLPTVVGCLPMILQNVSIVSLAGAAVASTTGSEKSRIYSYLFPVLGIMSSIL-ISW 366


>05_02_0072 - 6334613-6335215
          Length = 200

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 460 ARSSSKRPS-CVLNLPSRRDLQKRGSGCEPPNH 555
           A SS+  P+     LP R   ++RG GC PP +
Sbjct: 143 AASSTSAPTRSTATLPRRATTRRRGRGCSPPTN 175


>03_02_0868 + 11937652-11937757,11938097-11938671
          Length = 226

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 233 KGIRPTGDTSNEKQNCYYYL---IPSIFIFIYLLNLHWTSTNNSRLKLAKS 376
           K +RP G   NE   C YYL   +  + + +Y+ ++    TN   +   KS
Sbjct: 30  KKLRPDGFAVNEADKCVYYLHGGVEGVILCLYVDDILIFGTNLEMINEVKS 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,806,531
Number of Sequences: 37544
Number of extensions: 361323
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)