BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30844 (742 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 29 4.0 SB_55976| Best HMM Match : zf-C3HC4 (HMM E-Value=0.087) 28 9.1 SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1 >SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) Length = 766 Score = 29.1 bits (62), Expect = 4.0 Identities = 13/57 (22%), Positives = 26/57 (45%) Frame = +2 Query: 170 VVPQSINKGPKHLYKINLKQTKGIRPTGDTSNEKQNCYYYLIPSIFIFIYLLNLHWT 340 +V Q + G ++ ++ K P G + ++ Y PSI + +LL + W+ Sbjct: 578 IVEQRVTDGTDEIHSTDVNLAKYNLPDGTIGDHTESIKIYYDPSIVSYRHLLKVFWS 634 >SB_55976| Best HMM Match : zf-C3HC4 (HMM E-Value=0.087) Length = 171 Score = 27.9 bits (59), Expect = 9.1 Identities = 23/93 (24%), Positives = 38/93 (40%) Frame = +2 Query: 446 IDRLWPDPQVSVHLVY*TYRRVGTFRSEALDVSLLITRSFNRYRYRALISQLSSSKIT*D 625 +D +W D V +++ + + E L++ +T F+R + L S L + D Sbjct: 32 LDEIWTDQGVGDVIIFRWTQFLMDEALEVLNIKSPMTVRFHRQQSIPLDSSLVDKRAVQD 91 Query: 626 IASGSLFRCYKYQC*CSMKLRFHSTSLFIPHTC 724 +AS SL + K R TS F C Sbjct: 92 VASYSLLIASILEYEKQEKARVFDTSYFTCDVC 124 >SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 472 Score = 27.9 bits (59), Expect = 9.1 Identities = 23/93 (24%), Positives = 38/93 (40%) Frame = +2 Query: 446 IDRLWPDPQVSVHLVY*TYRRVGTFRSEALDVSLLITRSFNRYRYRALISQLSSSKIT*D 625 +D +W D V +++ + + E L++ +T F+R + L S L + D Sbjct: 124 LDEIWTDQGVGDVIIFRWTQFLMDEALEVLNIKSPMTVRFHRQQSIPLDSSLVDKRAVQD 183 Query: 626 IASGSLFRCYKYQC*CSMKLRFHSTSLFIPHTC 724 +AS SL + K R TS F C Sbjct: 184 VASYSLLIASILEYEKQEKARVFDTSYFTCDVC 216 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,933,795 Number of Sequences: 59808 Number of extensions: 431012 Number of successful extensions: 746 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 746 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1998111622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -