Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30844
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)                  29   4.0  
SB_55976| Best HMM Match : zf-C3HC4 (HMM E-Value=0.087)                28   9.1  
SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
          Length = 766

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +2

Query: 170 VVPQSINKGPKHLYKINLKQTKGIRPTGDTSNEKQNCYYYLIPSIFIFIYLLNLHWT 340
           +V Q +  G   ++  ++   K   P G   +  ++   Y  PSI  + +LL + W+
Sbjct: 578 IVEQRVTDGTDEIHSTDVNLAKYNLPDGTIGDHTESIKIYYDPSIVSYRHLLKVFWS 634


>SB_55976| Best HMM Match : zf-C3HC4 (HMM E-Value=0.087)
          Length = 171

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/93 (24%), Positives = 38/93 (40%)
 Frame = +2

Query: 446 IDRLWPDPQVSVHLVY*TYRRVGTFRSEALDVSLLITRSFNRYRYRALISQLSSSKIT*D 625
           +D +W D  V   +++   + +     E L++   +T  F+R +   L S L   +   D
Sbjct: 32  LDEIWTDQGVGDVIIFRWTQFLMDEALEVLNIKSPMTVRFHRQQSIPLDSSLVDKRAVQD 91

Query: 626 IASGSLFRCYKYQC*CSMKLRFHSTSLFIPHTC 724
           +AS SL      +     K R   TS F    C
Sbjct: 92  VASYSLLIASILEYEKQEKARVFDTSYFTCDVC 124


>SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/93 (24%), Positives = 38/93 (40%)
 Frame = +2

Query: 446 IDRLWPDPQVSVHLVY*TYRRVGTFRSEALDVSLLITRSFNRYRYRALISQLSSSKIT*D 625
           +D +W D  V   +++   + +     E L++   +T  F+R +   L S L   +   D
Sbjct: 124 LDEIWTDQGVGDVIIFRWTQFLMDEALEVLNIKSPMTVRFHRQQSIPLDSSLVDKRAVQD 183

Query: 626 IASGSLFRCYKYQC*CSMKLRFHSTSLFIPHTC 724
           +AS SL      +     K R   TS F    C
Sbjct: 184 VASYSLLIASILEYEKQEKARVFDTSYFTCDVC 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,933,795
Number of Sequences: 59808
Number of extensions: 431012
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)