Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30844
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67390.1 68414.m07670 F-box family protein contains Pfam PF00...    30   1.9  

>At1g67390.1 68414.m07670 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 479

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -3

Query: 377 PIWLTLVLNYLWKSSEGLKDR*I*KCSELNNNNNFVFHLMCPPSD-----GFLLFVLSLF 213
           P    LVLN +W + +         C +++NNN  V HL CP  D       LL + S+F
Sbjct: 224 PSLKVLVLNCMWYNEK--------TCLKIHNNNLKVLHLDCPHVDCIDVSAALLDIFSIF 275

Query: 212 Y 210
           Y
Sbjct: 276 Y 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,521,071
Number of Sequences: 28952
Number of extensions: 308379
Number of successful extensions: 639
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)