Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30838
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   5.6  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   9.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   9.7  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   9.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 409  PP*DISSKVSVPPTPPG*AFARPPVLVKLERPS 507
            PP  +    S PP P G   A PP L     PS
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 158 VHENTNISC*ISHVGLEKNIYIGKSK 81
           +H N + SC ISH    K +Y G ++
Sbjct: 554 IHINDSYSCIISHTKYGKLVYSGDTR 579


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 342  GSSTRLSNKKNLCSNGYELILIIXNSV*NHRLRPVYLTVTNHISKQTCN 196
            G  T L  ++NLC+NG  L   I  +  +  + P+ +   +  + Q CN
Sbjct: 1042 GVPTLLIKQENLCNNGSLLFEAIEQNSLSKVMIPLNICQKSFSTAQGCN 1090


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 154 TKIQIFLVELATLA*KKIYILGNP 83
           +KIQ FLV+L  L    I I+G+P
Sbjct: 244 SKIQYFLVKLLALQNSDITIVGDP 267


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 409 PP*DISSKVSVPPTPPG*AFARPP 480
           PP  I      PP PPG A A PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,922
Number of Sequences: 5004
Number of extensions: 45754
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)