Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30838
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0067 + 14620852-14621454                                         28   5.6  
03_05_0152 + 21291162-21291287,21291379-21291479,21293257-212933...    28   5.6  
11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294...    27   7.5  
09_02_0402 + 8582235-8582360,8582452-8582552,8584328-8584425,858...    27   7.5  

>10_08_0067 + 14620852-14621454
          Length = 200

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 485 RTGGRAKAQPGGVGGTETLELISQGGWR 402
           R G  AK + GG GG       +QGGWR
Sbjct: 116 RHGAEAKEKAGGWGGGSRRVKGAQGGWR 143


>03_05_0152 +
           21291162-21291287,21291379-21291479,21293257-21293354,
           21294016-21294068,21295465-21295659,21295812-21296084
          Length = 281

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = -2

Query: 515 WWPEGLSSFTRTG---GRAK-AQPGGVGGTETLELISQGGWR 402
           W  E   S TR G   GR +    GG  G+  L   + GGWR
Sbjct: 188 WQSEDYGSPTRRGDARGRCRQVDAGGTSGSRRLAWTASGGWR 229


>11_04_0347 +
           16628129-16628244,16628343-16628512,16629141-16629409,
           16630337-16630475,16630573-16630639,16630721-16630842,
           16630946-16631085
          Length = 340

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 479 GGRAKAQPGGVGGTETLELIS 417
           GGRA+++PGG GG   LE +S
Sbjct: 35  GGRARSKPGGGGGGGGLEDLS 55


>09_02_0402 +
           8582235-8582360,8582452-8582552,8584328-8584425,
           8585089-8585151,8586540-8586721,8586874-8587146
          Length = 280

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = -2

Query: 515 WWPEGLSSFTRTG---GRAK-AQPGGVGGTETLELISQGGWR 402
           W  E   S TR G   GR +    GG  G+  L   + GGWR
Sbjct: 187 WQGEDYGSPTRRGDARGRCRQVDAGGTSGSRRLAWTASGGWR 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,323
Number of Sequences: 37544
Number of extensions: 320974
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)